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protein_P3

Euk-Vir

Chilli_veinal_mottle_virus

protein_P3__NP_982337__Chilli_veinal_mottle_virus__52280

Identity

Accession:
NP_982337 ↗
Protein ID:
protein_P3
Kingdom:
euk

Quality

78.3 mean pLDDT

Cluster

View cluster (66 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-167
PDB
Domain cluster: rep: P3__YP_009509100__Daphne_virus_Y__282712__D3-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13608.11 best Potyvirid-P3 67.6 1.70e-18 96.3% 33.6%
D2 medium residues 236-291
PDB
Domain cluster: representative
D3 medium residues 292-344
PDB
Domain cluster: rep: P3__YP_010088121__Dendrobium_chlorotic_mosaic_virus__2562807__D285-349
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.83 61.0 4.02e-01 86.8% 21.1%
2eucA00 1.10.8.570 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Hypothetical protein YfmB 0.76 65.0 5.10e-01 94.3% 48.6%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.75 60.0 4.21e-01 86.8% 45.0%
1q77A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 42.0 3.04e-01 79.2% 21.0%
1ku2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.26e-01 88.7% 75.4%
7tvcA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.71 57.0 4.44e-01 92.5% 40.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 50.0 3.14e-01 77.4% 14.5%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.89e-01 88.7% 70.2%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 4.58e-01 86.8% 53.4%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.68 46.0 3.24e-01 73.6% 21.2%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 45.0 4.11e-01 79.2% 52.9%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.66 57.0 3.77e-01 100.0% 48.9%
4ixjA02 3.30.1690.20 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › 0.64 54.0 4.01e-01 100.0% 75.5%
3b0dB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 54.0 4.48e-01 96.2% 58.9%
3a2vD02 3.30.1020.10 Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 0.64 49.0 4.10e-01 84.9% 90.5%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 49.0 4.17e-01 92.5% 50.0%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 55.0 3.49e-01 100.0% 69.7%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.62 46.0 4.08e-01 88.7% 56.0%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 42.0 3.20e-01 73.6% 29.7%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 48.0 4.72e-01 88.7% 89.7%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.61 50.0 4.13e-01 92.5% 86.6%
2v8pA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 49.0 3.61e-01 94.3% 94.2%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.60 51.0 4.66e-01 100.0% 77.0%
5diyA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 46.0 2.95e-01 90.6% 23.9%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 4.15e-01 100.0% 96.6%
1uf9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 48.0 3.41e-01 100.0% 74.9%
7dd9A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.56 47.0 3.01e-01 96.2% 27.3%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 42.0 4.08e-01 84.9% 72.6%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.56 44.0 3.28e-01 88.7% 55.9%
3fhnA02 1.20.58.1420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain B 0.55 42.0 3.38e-01 88.7% 56.4%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.55 44.0 3.75e-01 88.7% 94.4%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.55 43.0 4.13e-01 90.6% 90.5%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.53 39.0 3.39e-01 86.8% 95.9%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 45.0 3.01e-01 100.0% 57.1%
2l0rA00 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.52 45.0 3.65e-01 98.1% 62.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.85 61.0 6.27e-01 84.9% 80.0%
None — 0.82 60.0 4.23e-01 88.7% 27.3%
3664504 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.82 62.0 4.26e-01 88.7% 26.6%
3662896 101.1.1.411 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.82 60.0 4.42e-01 88.7% 32.8%
4452303 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 58.0 5.43e-01 88.7% 64.6%
3881313 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 55.0 5.10e-01 84.9% 60.0%
5063967 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 5.57e-01 86.8% 70.0%
2807554 101.1.1.27 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.77 67.0 5.29e-01 94.3% 49.5%
3973557 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 66.0 5.15e-01 94.3% 47.3%
3771 4119.1.1.1 ↗ alpha bundles › YfmB-like › YfmB-like › YfmB-like › DUF3212 0.76 65.0 5.09e-01 94.3% 48.1%
54731 4119.1.1.0 ↗ alpha bundles › YfmB-like › YfmB-like › YfmB-like 0.76 64.0 5.09e-01 94.3% 48.1%
4550123 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.74 54.0 5.20e-01 88.7% 68.3%
4231508 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 53.0 4.99e-01 84.9% 63.1%
3611998 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 59.0 5.54e-01 90.6% 80.0%
4555675 101.1.1.27 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DsrC 0.73 62.0 4.86e-01 94.3% 46.8%
3599791 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.73 60.0 3.59e-01 94.3% 14.2%
4253264 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.73 56.0 4.96e-01 94.3% 58.7%
4131842 101.1.3.25 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r3 0.72 56.0 4.94e-01 94.3% 58.7%
4663875 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 52.0 3.33e-01 88.7% 16.7%
4339699 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.72 55.0 5.51e-01 94.3% 80.0%
4547746 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 48.0 4.04e-01 71.7% 41.1%
3334378 101.35.1.32 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF25874 0.72 55.0 5.47e-01 86.8% 81.8%
3971933 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 54.0 5.08e-01 94.3% 67.7%
5050325 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.70 54.0 3.35e-01 84.9% 15.4%
5074724 4953.1.1.4 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.70 50.0 4.24e-01 90.6% 45.6%
3826046 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 52.0 3.72e-01 88.7% 26.7%
4665743 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.56e-01 94.3% 48.6%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.68 54.0 3.80e-01 94.3% 28.7%
3280723 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 49.0 4.10e-01 88.7% 44.4%
4876273 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.67 49.0 4.65e-01 88.7% 65.7%
None — 0.65 50.0 4.46e-01 88.7% 57.5%
4518420 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.64 57.0 5.34e-01 100.0% 83.1%
4562263 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.64 44.0 2.77e-01 73.6% 12.8%
4043516 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.64 48.0 3.50e-01 100.0% 29.3%
5083838 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.64 45.0 2.98e-01 77.4% 18.3%
4016091 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.64 49.0 4.17e-01 84.9% 51.8%
3579615 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.63 45.0 3.82e-01 75.5% 45.9%
None — 0.63 53.0 3.19e-01 100.0% 32.9%
3705510 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.63 53.0 3.64e-01 98.1% 43.4%
3715199 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.63 52.0 3.20e-01 100.0% 17.1%
3259657 605.8.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.62 50.0 4.62e-01 90.6% 77.1%
4886009 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.62 44.0 2.80e-01 77.4% 13.7%
3531209 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.62 51.0 4.68e-01 92.5% 70.0%
3726143 323.1.1.20 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding,ACAS_N 0.60 44.0 2.78e-01 81.1% 14.9%
5046448 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.60 46.0 4.50e-01 88.7% 85.0%
3963537 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.60 43.0 2.72e-01 77.4% 13.7%
5039745 2003.1.1.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.60 41.0 2.77e-01 73.6% 18.2%
3717378 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.59 52.0 3.26e-01 100.0% 71.5%
3288971 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.57 49.0 3.62e-01 100.0% 48.7%
3214018 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.56 43.0 3.53e-01 92.5% 46.3%
5027571 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.54 42.0 2.38e-01 83.0% 72.6%
4084484 6155.1.1.17 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N 0.52 42.0 3.79e-01 92.5% 78.7%