←Back to structures

protein_Rta

Euk-Vir

Equid_gammaherpesvirus_5

protein_Rta__YP_009118438__Equid_gammaherpesvirus_5__10371

Identity

Accession:: YP_009118438 ↗
Protein ID:: protein_Rta
Kingdom:: euk

Quality

54.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Percavirus› Equid_gammaherpesvirus_5

TaxID: 10371

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-110_208-240

PDB

Domain cluster: rep: ORF50__YP_010084411__Retroperitoneal_fibromatosis-associated_herpesvirus__111469__D9-108_206-222

CATH (31)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pubA01	1.10.10.2400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain	0.71	37.0	4.68e-01	77.2%	85.1%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	40.0	5.02e-01	83.5%	98.6%
2nq2A00	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.68	52.0	3.93e-01	81.9%	69.2%
7eu3E01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.64	39.0	4.52e-01	82.7%	86.2%
1s2xA00	1.20.190.30	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ	0.63	45.0	4.05e-01	74.0%	97.8%
2h7oA01	1.20.120.1330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain	0.63	50.0	5.07e-01	82.7%	97.6%
2b1eA02	1.20.1310.30	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like ›	0.62	46.0	4.34e-01	76.4%	69.5%
2fji101	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.61	50.0	4.24e-01	88.2%	83.7%
2mx8A01	1.10.274.70	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain	0.60	46.0	4.85e-01	79.5%	89.4%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.60	41.0	4.49e-01	85.0%	87.0%
2a2fX02	1.20.58.670	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D	0.59	49.0	4.88e-01	87.4%	93.0%
3lsjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	51.0	4.83e-01	93.7%	94.8%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.58	42.0	4.42e-01	85.0%	83.3%
4it4A02	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.58	37.0	4.18e-01	82.7%	87.9%
4bx8A04	1.25.40.850	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Sec1/Munc18 (SM) protein, domain 3b	0.57	33.0	3.81e-01	74.0%	77.2%
2pfdA03	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.57	43.0	3.71e-01	78.7%	84.2%
2lo6A00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.57	49.0	4.56e-01	91.3%	91.6%
1bf5A01	1.20.1050.20	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain	0.57	45.0	4.06e-01	81.9%	90.5%
5h5mA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.57	45.0	4.52e-01	84.3%	83.1%
2l6hA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.57	43.0	4.04e-01	79.5%	92.9%
2c2uA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	44.0	3.93e-01	82.7%	80.9%
2b0hA01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.56	41.0	4.18e-01	85.8%	77.3%
5mdtA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	46.0	4.39e-01	89.8%	92.8%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.54	39.0	4.10e-01	82.7%	82.8%
1ylmA00	1.20.120.580	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like	0.54	43.0	4.17e-01	85.0%	78.2%
2ondA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	45.0	3.42e-01	92.1%	40.9%
4adzA00	1.20.58.1000	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer	0.53	35.0	4.08e-01	73.2%	95.6%
6h2dS01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.52	44.0	3.62e-01	89.8%	95.1%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.52	42.0	4.13e-01	85.8%	88.0%
2epkX03	1.20.120.670	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase	0.51	46.0	3.81e-01	98.4%	90.2%
5an3A01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.51	37.0	3.76e-01	82.7%	75.2%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3427848	109.7.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E	0.71	42.0	4.87e-01	79.5%	82.0%
3334062	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.71	42.0	5.14e-01	81.9%	91.6%
2539030	601.2.1.4 ↗	alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Cytochrom_C_2	0.66	43.0	4.54e-01	84.3%	73.9%
5045531	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.65	40.0	4.78e-01	83.5%	91.8%
4020563	601.16.1.3 ↗	alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › GIT1_C	0.64	47.0	4.74e-01	85.0%	74.6%
4981575	601.14.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin	0.64	48.0	4.73e-01	89.8%	74.1%
3515736	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	53.0	4.19e-01	90.6%	94.5%
3264063	109.4.1.103 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GLE1	0.60	53.0	3.87e-01	95.3%	67.3%
3615219	109.4.1.903 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28	0.58	50.0	4.18e-01	94.5%	80.9%
3900974	604.1.1.66 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL	0.56	44.0	3.50e-01	81.9%	78.4%
3841137	109.4.1.662 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MEKK4_N	0.56	48.0	4.03e-01	94.5%	92.7%
3328086	3922.1.1.71 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Exo70_N	0.56	45.0	4.54e-01	84.3%	86.4%
3862729	7111.1.1.1 ↗	alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap	0.56	44.0	3.98e-01	83.5%	71.4%
4546517	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.55	46.0	4.33e-01	89.8%	84.5%
3378097	604.1.1.110 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › WIT1_2_N	0.55	43.0	4.47e-01	83.5%	86.7%
3177238	192.4.1.51 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › BCD_RFX	0.55	42.0	4.11e-01	80.3%	82.1%
3432720	604.1.1.118 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N	0.54	44.0	4.19e-01	84.3%	75.2%
3576407	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.54	43.0	4.53e-01	84.3%	94.8%
4013499	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.51	43.0	3.98e-01	93.7%	71.2%
3697705	3684.1.1.0 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like	0.51	41.0	3.59e-01	85.0%	70.5%
3514792	5059.1.1.3 ↗	alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT	0.50	39.0	2.88e-01	81.1%	84.7%
4262515	610.4.1.1 ↗	alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY	0.50	33.0	3.69e-01	88.2%	85.0%

D2 medium residues 111-207

PDB

Domain cluster: rep: ORF50__YP_010084594__Macaca_nemestrina_rhadinovirus_2__123630__D113-208

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03326.19 best	Herpes_TAF50	149.5	2.20e-43	100.0%	17.9%

D3 medium residues 241-301

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03326.19 best	Herpes_TAF50	53.3	3.20e-14	100.0%	13.3%