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protein_UL104

Euk-Vir

Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

protein_UL104__YP_004933881__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969

Identity

Accession:
YP_004933881 ↗
Protein ID:
protein_UL104
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

TaxID: 944969

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-184_206-227
PDB
Domain cluster: rep: capsid_portal_protein__YP_081550__Human_betaherpesvirus_5__10359__D90-194_601-636
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 89.3 2.90e-25 99.2% 21.2%
D2 medium residues 284-323_496-523
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01763.23 best Herpes_UL6 51.9 6.20e-14 61.8% 7.3%
PF01763.23 Herpes_UL6 31.9 7.40e-08 45.6% 5.3%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 64.0 6.19e-01 100.0% 80.3%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.77 56.0 5.44e-01 100.0% 70.3%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.71 54.0 5.64e-01 95.6% 88.7%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 60.0 5.22e-01 98.5% 100.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.70 60.0 5.71e-01 100.0% 92.7%
4flaC00 6.10.250.2560 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 60.0 4.90e-01 97.1% 66.1%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 59.0 5.70e-01 100.0% 98.7%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.67 53.0 4.68e-01 95.6% 59.8%
1hulA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 42.0 3.61e-01 72.1% 40.7%
2ieqA00 1.20.5.300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 59.0 5.47e-01 100.0% 78.4%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.67 60.0 5.76e-01 100.0% 93.5%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 49.0 5.50e-01 85.3% 100.0%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 57.0 5.17e-01 100.0% 98.9%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.65 57.0 5.03e-01 100.0% 67.6%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 51.0 4.59e-01 97.1% 61.7%
5ha6B00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 57.0 5.44e-01 100.0% 92.4%
1jlcB04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 33.0 3.42e-01 91.2% 53.1%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.63 53.0 4.42e-01 95.6% 67.2%
2eboA00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 54.0 5.27e-01 100.0% 95.9%
2uuiA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.62 55.0 4.25e-01 100.0% 47.1%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.62 50.0 4.84e-01 91.2% 78.9%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 55.0 5.21e-01 100.0% 92.6%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 48.0 4.69e-01 86.8% 83.8%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 47.0 4.87e-01 89.7% 100.0%
6yxr101 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.58 39.0 2.87e-01 70.6% 31.2%
6n6qD00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 45.0 2.74e-01 83.8% 15.5%
3kp9A01 1.20.1440.130 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain 0.56 51.0 3.83e-01 100.0% 42.6%
4hfvA02 6.10.280.170 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system 0.54 40.0 4.04e-01 100.0% 78.9%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.52 45.0 3.52e-01 100.0% 72.3%
4fidA02 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.51 44.0 3.71e-01 95.6% 93.9%
3nhqC03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 44.0 3.46e-01 95.6% 87.4%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.61e-01 79.4% 71.6%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3746763 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.75 67.0 5.41e-01 100.0% 65.4%
5083210 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.72 60.0 5.21e-01 95.6% 73.6%
3828382 4177.1.1.11 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 0.70 64.0 4.08e-01 100.0% 21.3%
3768459 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 59.0 4.35e-01 100.0% 44.3%
4961796 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.68 62.0 5.59e-01 100.0% 100.0%
3448946 3567.1.1.124 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Rx_N 0.68 57.0 5.03e-01 92.6% 84.0%
3730125 4323.1.1.1 ↗ alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.67 61.0 4.58e-01 100.0% 75.0%
3973441 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.67 57.0 5.17e-01 92.6% 100.0%
3450826 3748.1.1.2 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.67 59.0 5.11e-01 100.0% 65.0%
3573674 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.66 46.0 4.37e-01 100.0% 61.3%
3179076 604.7.1.1 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.66 58.0 4.68e-01 100.0% 50.8%
3820897 109.4.1.1682 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHM7_cyt 0.66 60.0 5.96e-01 98.5% 100.0%
3698669 304.44.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.66 49.0 3.25e-01 77.9% 44.6%
3834987 304.9.1.46 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PHM7_cyt 0.66 60.0 5.87e-01 100.0% 96.0%
3833641 192.8.1.342 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.66 60.0 6.01e-01 100.0% 100.0%
3251379 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.66 57.0 5.31e-01 100.0% 78.8%
3468013 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.65 58.0 5.11e-01 100.0% 72.0%
3598925 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.65 58.0 4.68e-01 100.0% 54.6%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.63 54.0 5.10e-01 98.5% 100.0%
3491910 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.61 56.0 5.43e-01 100.0% 98.7%
4953123 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 53.0 3.31e-01 100.0% 21.8%
4391428 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.61 49.0 3.93e-01 94.1% 44.4%
4575178 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.60 54.0 3.94e-01 100.0% 68.6%
3707191 109.4.1.451 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Iml2-TPR_39 0.60 52.0 3.35e-01 100.0% 28.7%
3524454 1134.1.2.11 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain › NUCB1_N 0.60 48.0 3.94e-01 86.8% 47.2%
3827431 192.17.1.16 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › PHM7_cyt 0.60 53.0 5.43e-01 95.6% 100.0%
3792641 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.59 52.0 4.79e-01 100.0% 85.6%
3359244 192.8.1.342 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › PHM7_cyt 0.59 53.0 5.40e-01 95.6% 100.0%
3255979 135.1.1.0 ↗ alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain 0.59 47.0 3.80e-01 85.3% 48.8%
3609065 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 2.97e-01 98.5% 27.4%
3449928 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.57 47.0 4.67e-01 89.7% 88.6%
4510299 3660.1.1.0 ↗ alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG 0.55 49.0 4.79e-01 100.0% 93.3%
3303163 150.3.1.48 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › THU_Piezo1 0.54 47.0 3.89e-01 100.0% 55.2%
5001990 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.53 40.0 3.32e-01 80.9% 47.2%
5017157 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.53 40.0 2.52e-01 80.9% 14.7%
3886137 605.6.1.6 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › zf-CCCH_10 0.51 44.0 4.36e-01 100.0% 98.6%