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protein_UL27

Euk-Vir

Cercopithecine_betaherpesvirus_5

protein_UL27__YP_004936004__Cercopithecine_betaherpesvirus_5__50292

Identity

Accession:
YP_004936004 ↗
Protein ID:
protein_UL27
Kingdom:
euk

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cercopithecine_betaherpesvirus_5

TaxID: 50292

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-262_281-374
PDB
Domain cluster: rep: protein_UL27__YP_004940053__Aotine_betaherpesvirus_1__50290__D178-261_284-374
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05999.17 best Herpes_U5 100.6 1.40e-28 53.1% 19.5%
PF05999.17 Herpes_U5 84.6 9.80e-24 49.1% 17.6%
D2 medium residues 11-55_75-116_463-502_539-570
PDB
Domain cluster: rep: protein_UL27__YP_002608241__Human_herpesvirus_5__10359__D30-84_99-149_492-533
D3 medium residues 117-179
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05999.17 best Herpes_U5 38.0 1.40e-09 63.5% 7.2%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.65 46.0 3.41e-01 76.2% 28.5%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.65 49.0 3.38e-01 82.5% 42.3%
4linD01 1.20.5.340 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 44.0 3.38e-01 92.1% 31.2%
4nv1E01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.64 46.0 3.26e-01 76.2% 44.6%
5vyqA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.63 46.0 3.32e-01 77.8% 44.6%
3q23A03 6.10.140.1360 Special › Helix non-globular › Helix Hairpins › 0.61 51.0 4.92e-01 92.1% 94.4%
2mjfB00 1.20.1440.260 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 44.0 3.89e-01 82.5% 52.6%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.60 50.0 3.51e-01 96.8% 82.4%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.60 44.0 3.44e-01 76.2% 77.3%
1na6B02 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 50.0 3.51e-01 100.0% 86.9%
7miqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 47.0 3.92e-01 88.9% 51.8%
2wd6A00 2.60.530.10 Mainly Beta › Sandwich › Major cell-surface adhesin PAc › Major cell-surface adhesin PAc 0.58 46.0 3.02e-01 90.5% 35.8%
2dkwA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 48.0 3.91e-01 100.0% 77.1%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 47.0 4.29e-01 100.0% 69.0%
7r8bB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.04e-01 95.2% 37.4%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 43.0 4.02e-01 98.4% 88.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3743093 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.75 52.0 3.97e-01 77.8% 31.7%
3398104 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.68 56.0 4.72e-01 90.5% 70.5%
3344715 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 61.0 4.06e-01 100.0% 38.7%
4170537 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.66 54.0 4.23e-01 88.9% 49.2%
4028163 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.66 53.0 3.93e-01 87.3% 38.7%
4566653 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.63 54.0 4.07e-01 90.5% 65.0%
4197827 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.62 55.0 4.13e-01 95.2% 62.2%
3500715 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.61 54.0 5.01e-01 100.0% 88.7%
4205724 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.61 53.0 3.90e-01 95.2% 54.2%
3425084 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.11e-01 100.0% 58.9%
3592315 7583.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins › Rossmann-like domain in AF1104-like proteins 0.55 45.0 2.92e-01 96.8% 27.5%
4015072 4096.1.1.0 ↗ a+b two layers › NAP-like › NAP-like › NAP-like 0.55 39.0 2.97e-01 76.2% 32.4%
3278587 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.53 44.0 3.38e-01 96.8% 41.3%
3650912 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 37.0 2.54e-01 81.0% 89.8%
D4 medium residues 380-462_503-538
PDB
Domain cluster: rep: GP27__YP_007417799__Caviid_betaherpesvirus_2__33706__D389-473_516-548
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05999.17 best Herpes_U5 84.7 9.60e-24 74.0% 17.4%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 39.0 4.79e-01 79.8% 77.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.71 39.0 5.11e-01 79.8% 100.0%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.69 49.0 4.92e-01 80.7% 72.9%
3lmfA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 50.0 5.25e-01 75.6% 99.1%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.68 50.0 4.74e-01 75.6% 100.0%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 49.0 5.08e-01 74.8% 95.5%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 38.0 4.78e-01 79.8% 98.5%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 36.0 4.56e-01 79.8% 100.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.65 35.0 4.45e-01 79.8% 93.8%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.62 36.0 3.90e-01 82.4% 66.7%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 41.0 4.77e-01 74.8% 97.7%
2yn7A00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.59 42.0 3.44e-01 89.9% 40.7%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.58 44.0 4.55e-01 79.0% 99.1%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.56 43.0 4.77e-01 79.8% 97.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3722421 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.80 43.0 4.04e-01 79.8% 45.7%
3969893 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 42.0 5.76e-01 79.8% 96.9%
3385717 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 44.0 3.82e-01 82.4% 41.2%
3600361 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.75 43.0 4.80e-01 79.8% 71.6%
3970792 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.73 54.0 5.46e-01 76.5% 98.3%
3593736 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.72 42.0 4.63e-01 82.4% 70.0%
5078048 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 41.0 5.07e-01 82.4% 93.3%
3932809 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.70 51.0 4.71e-01 75.6% 94.0%
4012137 611.7.1.0 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain 0.68 50.0 4.81e-01 75.6% 94.8%
3970810 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 37.0 4.40e-01 79.8% 80.0%
4941676 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 42.0 3.62e-01 82.4% 44.6%
3626316 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.65 53.0 5.18e-01 86.6% 96.9%
3230740 5001.1.1.35 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx 0.64 48.0 3.64e-01 79.0% 82.5%
3225319 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 49.0 4.99e-01 80.7% 100.0%
4029481 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.63 58.0 3.82e-01 97.5% 40.7%
3175481 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.62 41.0 3.54e-01 87.4% 43.9%
3407103 3871.1.1.0 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.61 46.0 4.37e-01 79.0% 90.7%
3560229 3291.1.1.230 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TBCA_PH 0.61 43.0 4.08e-01 79.8% 62.1%
5070606 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.60 45.0 4.30e-01 78.2% 92.6%
3839889 601.51.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.55 44.0 4.06e-01 81.5% 89.0%
4937014 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 43.0 2.96e-01 86.6% 36.6%