protein_UL52

Euk-Vir

Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

protein_UL52__YP_004933817__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969

Identity

71.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

TaxID: 944969

View cluster (76 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 19-34_128-281

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009176905__Testudinid_alphaherpesvirus_3__2560801__D32-61_81-232_316-336_452-482

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	135.9	3.20e-39	91.2%	24.7%

D2 medium residues 290-351

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_004940225__Saimiriine_betaherpesvirus_4__1535247__D262-319

D3 medium residues 352-476

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_010084958__Beluga_whale_alphaherpesvirus_1__1434720__D379-511

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	118.6	5.50e-34	99.2%	18.3%

D4 medium residues 477-552

PDB

Domain cluster: rep: DNA_packaging_protein_UL32__YP_009042094__Fruit_bat_alphaherpesvirus_1__1343901__D516-583

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01673.24 best	Herpes_env	81.8	7.50e-23	100.0%	13.8%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3pvuA02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.65	45.0	4.47e-01	73.7%	82.5%
2bl7A00	1.20.1440.50	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like	0.56	39.0	3.89e-01	73.7%	77.2%
5b1aC01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	37.0	3.90e-01	72.4%	88.2%
2byvE03	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	41.0	3.25e-01	88.2%	39.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3879987	601.48.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain	0.69	45.0	4.79e-01	72.4%	76.9%
4119003	206.1.3.5 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_aden	0.62	44.0	2.95e-01	73.7%	44.0%
3327408	109.4.1.442 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › THOC2_N	0.52	41.0	2.75e-01	90.8%	75.7%