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protein_UL70

Euk-Vir

Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

protein_UL70__YP_004933833__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969

Identity

Accession:: YP_004933833 ↗
Protein ID:: protein_UL70
Kingdom:: euk

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

TaxID: 944969

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-151

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_010085930__Wood_mouse_herpesvirus__432370__D12-162

D2 high residues 767-905

PDB

Domain cluster: rep: helicase-primase_primase_subunit__NP_944382__Psittacid_alphaherpesvirus_1__50294__D1138-1286

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03121.21 best	Herpes_UL52	80.7	8.30e-23	55.4%	96.0%

D3 medium residues 152-245

PDB

Domain cluster: rep: helicase_primase_complex__NP_050224__Human_betaherpesvirus_6B__32604__D142-241

D4 medium residues 246-322

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ceiA03	6.10.250.2380	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.58	44.0	3.95e-01	83.1%	100.0%
6vynC01	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.57	40.0	4.08e-01	98.7%	74.3%
5aj3N01	1.10.287.1480	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.55	36.0	3.51e-01	72.7%	57.1%
4irnA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.55	40.0	3.50e-01	81.8%	50.4%
4mk6A00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	44.0	3.43e-01	94.8%	72.3%
4ielA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	39.0	3.43e-01	84.4%	51.7%
1beoA00	1.10.239.10	Mainly Alpha › Orthogonal Bundle › Beta-cryptogein › Elicitin domain	0.51	36.0	3.36e-01	75.3%	67.3%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3419760	150.7.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › CGLD27-like	0.62	52.0	5.09e-01	96.1%	85.9%
3810044	198.1.1.2 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1	0.60	44.0	4.44e-01	100.0%	80.0%
4530585	5069.1.3.121 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › IspA	0.57	44.0	4.00e-01	84.4%	68.5%
3783191	223.2.1.9 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N	0.56	45.0	3.39e-01	89.6%	37.6%
3203302	101.1.17.33 ↗	alpha arrays › HTH › HTH › FF domain › PF31246	0.55	42.0	3.87e-01	85.7%	64.0%
3273880	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.54	40.0	3.29e-01	83.1%	56.2%
5026975	1056.1.1.1 ↗	a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD	0.53	41.0	3.08e-01	85.7%	50.0%
5070059	3834.1.1.25 ↗	alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121	0.53	39.0	2.74e-01	77.9%	41.2%
2540675	5063.1.1.1 ↗	alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK	0.52	41.0	4.09e-01	96.1%	88.5%
3739589	141.1.1.0 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases	0.51	41.0	2.98e-01	94.8%	43.5%
3790121	603.1.1.114 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1	0.50	33.0	3.16e-01	74.0%	53.0%

D5 medium residues 335-448_479-496

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_182338__Gallid_alphaherpesvirus_1__10386__D431-468_522-592_634-660

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6n3oA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.62	30.0	3.55e-01	75.0%	66.7%
1dp7P00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.61	31.0	3.84e-01	75.8%	81.6%
2yweA03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.57	29.0	3.65e-01	90.2%	80.5%
2o30A00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.55	28.0	3.46e-01	73.5%	78.0%
3igfA02	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.54	28.0	3.58e-01	72.7%	87.8%
6lpwA02	3.30.559.10	Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain	0.52	37.0	3.18e-01	73.5%	93.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3249045	101.1.15.0 ↗	alpha arrays › HTH › HTH › HAT1, C-terminal domain	0.60	31.0	3.20e-01	72.0%	48.5%
4210866	319.1.1.4 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20	0.54	28.0	3.45e-01	73.5%	77.6%
3925855	390.1.1.1 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1	0.53	33.0	3.91e-01	100.0%	91.1%
3936713	390.1.1.0 ↗	few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like	0.52	34.0	3.93e-01	100.0%	95.6%

D6 medium residues 449-478_514-557_660-690

PDB

Domain cluster: rep: UL70__YP_009137475__Papio_ursinus_cytomegalovirus__1667587__D455-502_644-677_692-712

D7 medium residues 580-659_691-706_730-764

PDB

Domain cluster: rep: helicase-primase_primase_subunit__YP_009352963__Columbid_alphaherpesvirus_1__93386__D448-469_826-897_943-981

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4malA00	1.20.58.2200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	25.0	3.54e-01	77.1%	89.8%
1w36F03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	37.0	2.96e-01	77.1%	81.5%