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protein_UL84

Euk-Vir

Cercopithecine_betaherpesvirus_5

protein_UL84__YP_004936051__Cercopithecine_betaherpesvirus_5__50292

Identity

Accession:
YP_004936051 ↗
Protein ID:
protein_UL84
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cercopithecine_betaherpesvirus_5

TaxID: 50292

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-145_399-450
PDB
Domain cluster: representative
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF06284.17 best Cytomega_UL84 64.8 8.30e-18 39.9% 10.2%
PF06284.17 Cytomega_UL84 51.2 1.10e-13 33.0% 9.0%
PF06284.17 Cytomega_UL84 29.1 5.20e-07 33.0% 12.1%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.66 51.0 5.49e-01 91.3% 95.2%
2ys4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 4.18e-01 72.8% 83.5%
1nkgA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 48.0 4.91e-01 99.4% 79.7%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 45.0 5.08e-01 96.0% 94.7%
2c9kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 45.0 4.67e-01 100.0% 77.4%
4fixA01 3.90.550.60 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.63 43.0 3.26e-01 100.0% 29.8%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 41.0 4.88e-01 100.0% 100.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.63 36.0 4.31e-01 87.9% 83.6%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 40.0 4.87e-01 99.4% 100.0%
8dwoJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 31.0 4.21e-01 85.0% 92.0%
7bysA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 40.0 4.64e-01 97.1% 91.0%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 41.0 4.72e-01 100.0% 92.1%
1qppA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.34e-01 83.2% 86.8%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 35.0 4.30e-01 100.0% 89.9%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.60 31.0 3.68e-01 77.5% 69.4%
3esmA00 2.60.40.2230 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 0.60 39.0 4.29e-01 94.2% 81.2%
4lorA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 40.0 4.65e-01 99.4% 98.3%
6z0jA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.59 37.0 4.32e-01 96.5% 88.4%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 4.83e-01 93.1% 98.5%
1m1sA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 4.37e-01 86.1% 95.4%
6mfaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 29.0 3.98e-01 91.3% 98.7%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 35.0 4.22e-01 72.8% 91.8%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 4.23e-01 98.3% 98.9%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 44.0 4.62e-01 100.0% 87.8%
4nehA04 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.58 40.0 4.25e-01 93.6% 78.6%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 39.0 4.55e-01 93.1% 99.1%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 4.32e-01 97.7% 79.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 4.21e-01 87.3% 96.1%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 31.0 3.87e-01 97.1% 86.4%
1gff200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 4.63e-01 100.0% 83.6%
4k7jA02 2.60.120.1360 Mainly Beta › Sandwich › Jelly Rolls › 0.56 37.0 4.35e-01 97.7% 94.3%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 31.0 4.07e-01 96.0% 100.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 4.67e-01 94.2% 95.2%
4w6yA00 2.60.120.1210 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 4.46e-01 100.0% 91.8%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 33.0 3.97e-01 74.0% 90.8%
6a48A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 44.0 4.78e-01 92.5% 100.0%
7wsoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.76e-01 92.5% 95.3%
1z9lA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 4.23e-01 86.7% 93.6%
1cwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.94e-01 86.7% 97.8%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 30.0 3.68e-01 74.0% 84.1%
3nsjA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 35.0 3.99e-01 80.3% 85.9%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 44.0 4.66e-01 93.6% 95.5%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 47.0 4.71e-01 100.0% 89.7%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 32.0 3.92e-01 98.3% 93.3%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 30.0 3.66e-01 91.9% 84.8%
2lg7A00 2.60.60.50 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.53 26.0 2.98e-01 88.4% 58.9%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 4.16e-01 98.3% 98.3%
7sf2D01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 4.20e-01 99.4% 80.9%
4jklA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 4.40e-01 99.4% 86.0%
2m83A00 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.52 34.0 3.78e-01 82.1% 82.0%
3j26N01 2.60.120.1100 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 4.51e-01 93.6% 93.5%
3zr5A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 31.0 3.44e-01 97.7% 75.0%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 35.0 4.02e-01 80.3% 97.6%
2y3aA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 38.0 4.23e-01 78.6% 100.0%
1tg7A04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 3.98e-01 93.6% 81.8%
1djxA03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 37.0 4.17e-01 80.3% 100.0%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3831284 207.1.1.465 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_3, LRR_4 0.69 44.0 3.19e-01 91.3% 23.9%
3821106 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 47.0 4.75e-01 92.5% 71.2%
5027597 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 43.0 5.26e-01 93.1% 100.0%
5010079 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 41.0 4.87e-01 99.4% 90.8%
4927301 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 37.0 4.42e-01 96.5% 84.3%
3804197 207.1.1.238 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3, LRR_13 0.63 42.0 2.98e-01 90.8% 22.6%
4098247 10.32.1.55 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glft2_N 0.63 44.0 4.57e-01 100.0% 76.2%
3403970 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.62 45.0 4.57e-01 97.7% 74.3%
3535908 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 34.0 4.09e-01 74.6% 82.7%
5002193 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 38.0 4.65e-01 91.9% 98.2%
3219782 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 39.0 4.42e-01 93.1% 83.7%
3591997 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 39.0 4.44e-01 93.6% 86.2%
3306300 10.32.1.44 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like 0.59 52.0 4.85e-01 100.0% 77.1%
3805014 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.59 47.0 4.93e-01 100.0% 91.8%
3222837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 4.36e-01 76.9% 85.9%
3997133 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 42.0 4.78e-01 99.4% 100.0%
3931572 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.58 41.0 4.65e-01 96.5% 99.2%
3802129 10.32.1.192 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.58 46.0 3.72e-01 91.9% 43.5%
3628398 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 38.0 4.17e-01 93.1% 82.1%
5039248 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 45.0 4.75e-01 94.8% 94.0%
3622983 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.56 41.0 4.62e-01 100.0% 100.0%
3992584 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 44.0 4.60e-01 100.0% 90.3%
3626140 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 43.0 4.58e-01 99.4% 92.0%
3258227 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 38.0 4.19e-01 98.3% 84.3%
5047228 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 49.0 4.61e-01 94.2% 100.0%
4940383 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 46.0 4.81e-01 93.6% 96.1%
4021982 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 41.0 3.38e-01 76.9% 97.4%
3801529 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 4.86e-01 94.2% 98.3%
3523713 10.4.1.22 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_CDCP1_2 0.55 39.0 4.43e-01 98.3% 100.0%
3260805 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 47.0 4.55e-01 93.1% 99.5%
3415694 10.40.1.0 ↗ beta sandwiches › jelly-roll › PHR domain › PHR domain 0.54 44.0 4.69e-01 93.6% 97.4%
3523254 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 41.0 4.06e-01 93.6% 76.1%
5051137 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 46.0 4.65e-01 93.6% 97.7%
3479972 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 41.0 4.23e-01 80.9% 97.6%
3509217 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 37.0 4.09e-01 84.4% 91.7%
3351346 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 40.0 4.19e-01 78.0% 98.7%
4983953 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 45.0 4.63e-01 94.8% 95.8%
1291147 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.52 34.0 3.78e-01 82.1% 82.0%
1349500 10.32.1.9 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N 0.52 44.0 4.36e-01 99.4% 85.6%
3297677 207.1.1.37 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID 0.52 36.0 2.70e-01 92.5% 27.3%
3670769 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 4.25e-01 96.5% 96.3%
3401428 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 34.0 3.76e-01 78.6% 81.4%
3784426 11.2.1.78 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_DCK_4th 0.51 39.0 4.13e-01 78.0% 94.7%
3211509 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.51 36.0 4.09e-01 85.5% 96.2%
3746613 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.51 45.0 4.54e-01 93.1% 95.3%
3211348 11.2.1.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › Anillin 0.51 37.0 3.77e-01 80.9% 74.3%
4030329 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 36.0 4.05e-01 78.0% 92.6%
3390403 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.51 42.0 4.40e-01 99.4% 96.2%
5039777 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 47.0 3.59e-01 100.0% 76.4%
3924107 11.2.1.52 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.51 36.0 4.13e-01 80.3% 97.7%
3563258 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 37.0 4.15e-01 80.9% 97.0%
3918031 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 37.0 4.05e-01 77.5% 92.9%
4024634 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 38.0 4.02e-01 78.6% 96.1%
D2 high residues 150-283
PDB
Domain cluster: rep: protein_UL84__YP_004940247__Saimiriine_betaherpesvirus_4__1535247__D144-278
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06284.17 best Cytomega_UL84 116.2 2.20e-33 79.8% 17.4%
PF06284.17 Cytomega_UL84 31.9 7.70e-08 25.4% 4.6%
D3 high residues 299-390
PDB
Domain cluster: rep: virion_transactivator_tegument__YP_009344900__Murine_roseolovirus__1940555__D266-350
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF06284.17 best Cytomega_UL84 123.7 1.20e-35 100.0% 15.0%
PF06501.16 Herpes_U55 28.4 1.10e-06 93.5% 19.0%