protein_UL86

Euk-Vir

Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969

Identity

74.5 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Cynomolgus_macaque_cytomegalovirus_strain_Ottawa

TaxID: 944969

View cluster (34 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 475-554

PDB

Domain cluster: rep: Cy118__YP_009337526__Cynomolgus_cytomegalovirus__1919083__D473-550

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	65.2	3.90e-18	98.8%	5.6%

D2 medium residues 43-98_126-199

PDB

D3 medium residues 237-287_1006-1074

PDB

Domain cluster: rep: KJ528544.1__AHZ10895.1__WP2_23__00023__D238-326_388-458

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	95.0	4.10e-27	58.3%	5.1%
PF03122.21	Herpes_MCP	45.3	4.10e-12	44.2%	3.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3eyrA00	3.15.10.40	Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439	0.50	27.0	2.45e-01	80.0%	36.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3448841	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	22.0	2.60e-01	80.0%	48.8%

D4 medium residues 442-474_1075-1136

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	54.7	5.90e-15	67.4%	4.4%

D5 medium residues 580-722_767-802

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	158.1	3.70e-46	83.8%	10.3%
PF03122.21	Herpes_MCP	30.5	1.20e-07	20.7%	2.2%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vdyA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	37.0	4.14e-01	74.3%	81.4%
3gi7A00	1.20.1270.180	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.54	25.0	3.17e-01	85.5%	69.9%
5a4uF02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	35.0	4.23e-01	77.7%	100.0%
1wkbA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.51	29.0	3.48e-01	84.9%	81.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.96	93.0	6.49e-01	100.0%	46.4%
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.85	80.0	5.66e-01	100.0%	48.5%
3655757	109.4.1.75 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IFRD	0.60	43.0	3.23e-01	72.1%	76.1%
4173849	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.54	27.0	3.38e-01	88.3%	77.3%
3240585	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	38.0	3.79e-01	74.9%	85.9%
4022819	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	36.0	3.72e-01	72.6%	81.2%
3701255	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	39.0	3.37e-01	81.0%	62.9%
3935565	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	35.0	2.98e-01	74.9%	42.0%