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protein_UL87
Euk-VirElephantid_betaherpesvirus_1
protein_UL87__YP_007969787__Elephantid_betaherpesvirus_1__146015
Identity
- Accession:
- YP_007969787 ↗
- Protein ID:
- protein_UL87
- Kingdom:
- euk
Quality
62.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Proboscivirus›
Elephantid_betaherpesvirus_1
TaxID: 146015
Cluster
View cluster (19 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 249-361
Domain cluster:
rep: protein_UL87__YP_009051991__Elephant_endotheliotropic_herpesvirus_5__768738__D262-362
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03043.21 best | Herpes_UL87 | 40.1 | 2.70e-10 | 100.0% | 23.1% |
D2
medium
residues 18-46_92-145
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0hA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 37.0 | 2.73e-01 | 75.9% | 87.2% |
| 5ccbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 42.0 | 3.22e-01 | 94.0% | 94.3% |
| 1g38A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 3.08e-01 | 92.8% | 85.7% |
D3
medium
residues 47-91_146-240
Domain cluster:
rep: hypothetical_protein_RHVP.24__YP_004207860__Cricetid_gammaherpesvirus_2__1605972__D4-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04532.17 best | DUF587 | 50.3 | 2.90e-13 | 51.4% | 32.6% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 39.0 | 4.53e-01 | 88.6% | 86.1% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 26.0 | 3.86e-01 | 80.7% | 93.2% |
| 2wicA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 32.0 | 3.82e-01 | 94.3% | 82.2% |
| 3tt9A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 36.0 | 3.03e-01 | 99.3% | 37.3% |
| 2yskA00 | 1.10.490.110 | Mainly Alpha › Orthogonal Bundle › Globin-like › Uncharacterized conserved protein DUF2267 | 0.56 | 42.0 | 4.17e-01 | 78.6% | 75.7% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 30.0 | 3.77e-01 | 90.7% | 94.6% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 25.0 | 3.39e-01 | 75.7% | 92.1% |
| 7tj4A01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 29.0 | 3.09e-01 | 93.6% | 57.5% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 27.0 | 3.53e-01 | 75.0% | 97.0% |
| 3crmA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 32.0 | 3.13e-01 | 77.9% | 55.3% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.51 | 26.0 | 3.41e-01 | 76.4% | 97.0% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.50 | 26.0 | 3.42e-01 | 77.9% | 94.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4118464 | 4030.1.1.1 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B | 0.58 | 26.0 | 3.66e-01 | 72.1% | 98.2% |
| 3592170 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 40.0 | 3.08e-01 | 99.3% | 32.5% |
| 4196863 | 184.1.1.1 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Glycos_trans_3N | 0.55 | 27.0 | 3.63e-01 | 77.1% | 92.9% |
| 1346823 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.53 | 23.0 | 3.17e-01 | 79.3% | 81.2% |
| 3932321 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.52 | 31.0 | 3.31e-01 | 92.1% | 64.0% |
D4
medium
residues 433-460_472-612
D5
medium
residues 613-684
Domain cluster:
rep: ORF24__YP_001129377__Human_gammaherpesvirus_8__37296__D597-656
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03043.21 best | Herpes_UL87 | 75.7 | 4.30e-21 | 100.0% | 13.0% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.71 | 59.0 | 3.93e-01 | 91.7% | 27.8% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.69 | 54.0 | 5.55e-01 | 86.1% | 91.0% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.69 | 48.0 | 4.32e-01 | 73.6% | 62.7% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.67 | 48.0 | 5.21e-01 | 84.7% | 96.4% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.67 | 46.0 | 4.67e-01 | 83.3% | 71.2% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.66 | 53.0 | 4.99e-01 | 90.3% | 91.2% |
| 2w96A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 53.0 | 4.56e-01 | 87.5% | 55.8% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 53.0 | 5.18e-01 | 93.1% | 82.3% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.64 | 45.0 | 4.52e-01 | 79.2% | 72.0% |
| 3tw6A06 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 40.0 | 4.54e-01 | 91.7% | 85.2% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.64 | 47.0 | 4.54e-01 | 80.6% | 95.2% |
| 2d2eA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 47.0 | 3.31e-01 | 80.6% | 27.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.63 | 48.0 | 4.47e-01 | 84.7% | 63.5% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.63 | 46.0 | 4.51e-01 | 80.6% | 70.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 49.0 | 4.74e-01 | 87.5% | 76.2% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 50.0 | 4.77e-01 | 88.9% | 77.6% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.62 | 44.0 | 4.74e-01 | 83.3% | 94.8% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.62 | 48.0 | 4.56e-01 | 86.1% | 73.3% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.61 | 45.0 | 4.20e-01 | 88.9% | 62.0% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 49.0 | 4.49e-01 | 95.8% | 66.3% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 49.0 | 4.44e-01 | 90.3% | 70.0% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 48.0 | 2.90e-01 | 88.9% | 23.0% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.60 | 47.0 | 3.87e-01 | 88.9% | 60.7% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.59 | 43.0 | 4.30e-01 | 94.4% | 74.0% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 46.0 | 4.34e-01 | 84.7% | 78.7% |
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.58 | 43.0 | 4.09e-01 | 84.7% | 66.3% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 47.0 | 4.46e-01 | 95.8% | 76.1% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 42.0 | 4.22e-01 | 77.8% | 77.8% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 42.0 | 3.88e-01 | 86.1% | 60.2% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.56 | 42.0 | 3.89e-01 | 80.6% | 67.0% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.55 | 41.0 | 4.24e-01 | 84.7% | 89.4% |
| 2pw6A00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.55 | 44.0 | 3.10e-01 | 90.3% | 42.6% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 41.0 | 3.59e-01 | 83.3% | 61.0% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.54 | 42.0 | 3.96e-01 | 86.1% | 77.8% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.54 | 35.0 | 3.46e-01 | 86.1% | 60.3% |
| 6l1kA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.54 | 44.0 | 3.30e-01 | 94.4% | 86.8% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.52 | 36.0 | 3.44e-01 | 70.8% | 77.0% |
| 1pieA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 40.0 | 3.00e-01 | 90.3% | 35.1% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.14e-01 | 79.2% | 50.8% |
| 1t0fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.27e-01 | 75.0% | 75.8% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 36.0 | 3.40e-01 | 79.2% | 64.6% |
| 2vugA04 | 1.20.58.2250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 36.0 | 3.41e-01 | 77.8% | 73.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003091 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.76 | 54.0 | 5.77e-01 | 84.7% | 90.0% |
| 5070580 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.73 | 51.0 | 5.47e-01 | 81.9% | 88.1% |
| 3946310 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.73 | 56.0 | 3.61e-01 | 83.3% | 44.6% |
| 4201756 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 51.0 | 5.66e-01 | 83.3% | 100.0% |
| 3421412 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 51.0 | 5.00e-01 | 91.7% | 70.0% |
| 4948317 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.69 | 47.0 | 5.36e-01 | 84.7% | 100.0% |
| 3486635 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.69 | 42.0 | 4.41e-01 | 83.3% | 67.7% |
| 4984693 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.68 | 46.0 | 5.26e-01 | 83.3% | 100.0% |
| 4038157 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.68 | 45.0 | 5.22e-01 | 83.3% | 98.0% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.68 | 50.0 | 5.23e-01 | 87.5% | 87.7% |
| 3278005 | 142.1.1.7 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Phosphatase-like_N | 0.68 | 55.0 | 5.70e-01 | 88.9% | 98.5% |
| 4973086 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.67 | 46.0 | 5.17e-01 | 86.1% | 92.7% |
| 3999761 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 54.0 | 4.43e-01 | 88.9% | 50.4% |
| 5023530 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.67 | 51.0 | 5.40e-01 | 90.3% | 100.0% |
| 4953164 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.67 | 43.0 | 4.85e-01 | 83.3% | 87.3% |
| 5072245 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.66 | 45.0 | 5.08e-01 | 86.1% | 92.7% |
| 4942992 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.66 | 44.0 | 5.07e-01 | 83.3% | 98.0% |
| 4538372 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 39.0 | 4.12e-01 | 73.6% | 64.6% |
| 3215505 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.65 | 44.0 | 3.31e-01 | 70.8% | 42.7% |
| 5030767 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.64 | 48.0 | 5.13e-01 | 88.9% | 95.0% |
| 5010724 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.63 | 45.0 | 4.45e-01 | 77.8% | 70.7% |
| 4594328 | 181.1.1.2 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N | 0.63 | 47.0 | 4.68e-01 | 88.9% | 77.3% |
| 5015550 | 643.1.1.1 ↗ | alpha arrays › Hypothetical protein MTH393 › Hypothetical protein MTH393 › Hypothetical protein MTH393 › DUF1959 | 0.63 | 47.0 | 3.88e-01 | 80.6% | 44.6% |
| 5025139 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 48.0 | 4.38e-01 | 84.7% | 63.2% |
| 4962267 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.62 | 46.0 | 4.29e-01 | 84.7% | 63.3% |
| 3961618 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.62 | 44.0 | 4.77e-01 | 86.1% | 91.7% |
| 2819342 | 3788.1.1.1 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR | 0.62 | 46.0 | 4.81e-01 | 94.4% | 92.2% |
| 4585171 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.61 | 43.0 | 4.69e-01 | 88.9% | 96.4% |
| 3591437 | 601.29.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › TM1646-like › TM1646-like | 0.61 | 47.0 | 4.24e-01 | 83.3% | 60.0% |
| 1124196 | 3788.1.1.1 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR | 0.61 | 49.0 | 4.49e-01 | 95.8% | 66.3% |
| 3280958 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.61 | 43.0 | 2.82e-01 | 75.0% | 28.9% |
| 3860555 | 7062.1.1.1 ↗ | alpha bundles › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › RD3 | 0.60 | 50.0 | 4.27e-01 | 93.1% | 88.3% |
| 3988117 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.60 | 49.0 | 4.23e-01 | 90.3% | 88.7% |
| 3522311 | 7062.1.1.1 ↗ | alpha bundles › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › Helical domain of retinal degeneration 3 protein › RD3 | 0.60 | 49.0 | 4.20e-01 | 91.7% | 89.2% |
| 4120356 | 103.5.1.4 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 | 0.59 | 47.0 | 4.28e-01 | 87.5% | 82.0% |
| 4505497 | 103.5.1.1 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › PYC_OADA | 0.59 | 37.0 | 3.90e-01 | 88.9% | 69.2% |
| 3884427 | 103.11.1.1 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N | 0.59 | 46.0 | 4.73e-01 | 97.2% | 98.5% |
| 3545841 | 3694.1.1.1 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Peptidase_S41_N | 0.58 | 41.0 | 4.23e-01 | 83.3% | 80.0% |
| 3783718 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.58 | 41.0 | 4.19e-01 | 84.7% | 78.6% |
| 4956012 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.57 | 45.0 | 4.01e-01 | 86.1% | 74.3% |
| 4398425 | 148.1.3.26 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 | 0.57 | 45.0 | 4.22e-01 | 91.7% | 68.4% |
| 3519127 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.55 | 46.0 | 4.49e-01 | 93.1% | 95.0% |
| 3981131 | 3076.1.1.0 ↗ | alpha arrays › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase | 0.55 | 43.0 | 3.16e-01 | 88.9% | 71.0% |
| 5038872 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 41.0 | 4.19e-01 | 81.9% | 84.3% |
| 168067 | 2.1.1.95 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C | 0.54 | 38.0 | 3.18e-01 | 76.4% | 81.4% |
| 3180088 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.54 | 46.0 | 3.11e-01 | 100.0% | 83.0% |
| 3988566 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.53 | 39.0 | 3.98e-01 | 81.9% | 82.9% |
| 5060145 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.53 | 40.0 | 4.16e-01 | 80.6% | 90.8% |
| 3602612 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 37.0 | 3.78e-01 | 77.8% | 80.0% |
| 4141643 | 4002.1.1.4 ↗ | alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › DHQS_C | 0.52 | 39.0 | 2.95e-01 | 84.7% | 68.5% |
| 4928413 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.51 | 38.0 | 3.71e-01 | 83.3% | 77.6% |
| 1918952 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.51 | 37.0 | 3.42e-01 | 88.9% | 58.2% |
| 3938558 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.50 | 43.0 | 3.97e-01 | 94.4% | 78.9% |
D6
medium
residues 686-778