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protein_UL87
Euk-VirHuman_gammaherpesvirus_4
protein_UL87__YP_401698__Human_gammaherpesvirus_4__10376
Identity
- Accession:
- YP_401698 ↗
- Protein ID:
- protein_UL87
- Kingdom:
- euk
Quality
60.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Lymphocryptovirus›
human_gammaherpesvirus_4
TaxID: 10376
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-106_118-182
D2
high
residues 195-324
Domain cluster:
rep: ORF16__NP_733869__Callitrichine_gammaherpesvirus_3__106331__D190-345
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03043.21 best | Herpes_UL87 | 60.6 | 1.70e-16 | 100.0% | 24.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 34.0 | 3.84e-01 | 98.5% | 82.5% |
| 3l0qA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 2.85e-01 | 73.1% | 86.2% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 4.20e-01 | 95.4% | 90.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3502939 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.54 | 31.0 | 3.67e-01 | 82.3% | 82.2% |
| 3983343 | 223.3.1.9 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › DUF2300 | 0.51 | 39.0 | 3.30e-01 | 80.0% | 64.9% |
| 3435374 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 30.0 | 3.55e-01 | 82.3% | 85.9% |
| 4979624 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 38.0 | 4.09e-01 | 93.1% | 94.5% |
| 5027468 | 281.1.1.2 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › ThiP_synth | 0.50 | 41.0 | 3.75e-01 | 90.8% | 97.8% |
D3
high
residues 679-740
D4
medium
residues 404-420_513-590
D5
medium
residues 421-512