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protein_US23

Euk-Vir

Panine_betaherpesvirus_2

protein_US23__NP_612796__Panine_betaherpesvirus_2__188763

Identity

Accession:
NP_612796 ↗
Protein ID:
protein_US23
Kingdom:
euk

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Cytomegalovirus› Panine_betaherpesvirus_2

TaxID: 188763

Cluster

View cluster (59 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-162
PDB
Domain cluster: rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02393.22 best US22 81.6 6.90e-23 85.4% 98.4%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 23.0 3.45e-01 98.5% 72.7%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 4.24e-01 99.3% 78.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 28.0 3.60e-01 87.6% 88.0%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 3.09e-01 79.6% 42.0%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.52 27.0 2.57e-01 81.0% 41.4%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.93e-01 78.1% 50.1%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 3.11e-01 92.7% 94.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
363983 234.1.1.1 ↗ a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease 0.57 36.0 4.16e-01 89.1% 89.5%
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.55 34.0 4.13e-01 94.9% 97.6%
3546533 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.54 43.0 3.18e-01 86.1% 89.6%
3873021 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.53 40.0 2.72e-01 78.1% 26.3%
None — 0.53 40.0 3.00e-01 79.6% 80.0%
3168805 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 44.0 3.31e-01 88.3% 96.7%
3594793 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 3.09e-01 80.3% 51.4%
3935168 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 3.02e-01 74.5% 80.4%
3895602 5.1.4.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.53 40.0 3.11e-01 79.6% 55.9%
3442241 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 43.0 3.28e-01 86.9% 97.5%
1107292 5.1.4.53 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF4784 0.52 39.0 3.10e-01 79.6% 68.1%
3211396 5.1.4.167 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR19_1st 0.52 39.0 2.88e-01 78.1% 44.9%
3390301 5.1.4.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.52 39.0 3.07e-01 79.6% 63.4%
3323788 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 42.0 3.20e-01 85.4% 91.5%
3692266 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 3.25e-01 94.2% 78.4%
3804813 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 37.0 2.85e-01 74.5% 57.6%
3469587 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 43.0 3.20e-01 90.5% 94.2%
3621260 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.81e-01 84.7% 68.7%
3820829 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.51 40.0 3.05e-01 82.5% 89.2%
3380688 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 42.0 3.26e-01 88.3% 93.4%
D2 high residues 171-340
PDB
Domain cluster: rep: protein_U95__YP_073826__Human_betaherpesvirus_7__10372__D619-769
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02393.22 best US22 66.9 2.50e-18 84.1% 97.6%
D3 medium residues 343-399
PDB
Domain cluster: rep: US23__YP_009137426__Papio_ursinus_cytomegalovirus__1667587__D342-397
D4 medium residues 549-598
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wczA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.53 40.0 3.97e-01 94.0% 90.7%