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protein_V32

Euk-Vir

Human_alphaherpesvirus_3

protein_V32__NP_040155__Human_alphaherpesvirus_3__10335

Identity

Accession:
NP_040155 ↗
Protein ID:
protein_V32
Kingdom:
euk

Quality

54.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Human_alphaherpesvirus_3

TaxID: 10335

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-130
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25717.2 best Herpes_ORF32 105.2 1.80e-30 100.0% 73.7%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 46.0 3.79e-01 88.9% 58.5%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 35.0 3.84e-01 92.1% 87.8%
1ybiA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.36e-01 92.1% 69.9%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.52 36.0 2.91e-01 76.2% 86.3%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 32.0 2.88e-01 98.4% 44.3%
1gmnA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.51 40.0 3.71e-01 90.5% 92.0%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 33.0 2.91e-01 98.4% 46.7%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.50 32.0 3.60e-01 100.0% 91.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3430102 375.1.1.51 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 0.62 39.0 4.65e-01 95.2% 100.0%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.61 40.0 4.15e-01 88.9% 71.7%
3705470 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.60 35.0 4.03e-01 100.0% 82.2%
3453727 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.59 37.0 3.85e-01 96.8% 66.7%
3724129 375.1.1.52 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_6 0.58 36.0 4.28e-01 98.4% 100.0%
3595896 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 35.0 3.97e-01 100.0% 84.4%
3265984 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 35.0 4.09e-01 100.0% 95.0%
3610326 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.57 34.0 3.99e-01 100.0% 95.0%
3607261 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 35.0 3.89e-01 93.7% 86.7%
3593793 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.55 32.0 3.51e-01 96.8% 70.0%
4032123 4112.1.1.1 ↗ beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX 0.53 36.0 3.68e-01 93.7% 73.3%
3251948 375.1.3.2 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP 0.52 35.0 3.57e-01 98.4% 71.7%
3251202 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 33.0 2.73e-01 100.0% 31.5%
4665551 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.52 33.0 3.70e-01 93.7% 91.1%
3212980 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 40.0 3.54e-01 87.3% 87.0%
5027909 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.55e-01 81.0% 73.3%
5030079 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.51 38.0 2.28e-01 81.0% 29.1%
4161260 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.51 33.0 3.63e-01 95.2% 91.1%
4992429 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.51 35.0 3.04e-01 81.0% 45.0%
4064699 327.6.1.8 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › PF29609 0.51 38.0 3.02e-01 96.8% 39.2%
4952878 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.50 35.0 3.67e-01 93.7% 83.6%