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protein_binding_motif_protein
Euk-VirRanid_herpesvirus_3
protein_binding_motif_protein__YP_009362323__Ranid_herpesvirus_3__1987509
Identity
- Accession:
- YP_009362323 ↗
- Protein ID:
- protein_binding_motif_protein
- Kingdom:
- euk
Quality
59.7
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Alloherpesviridae›
Batravirus›
Ranid_herpesvirus_3
TaxID: 1987509
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 84-209
D2
high
residues 263-407
Domain cluster:
rep: isomerase_motif_protein__YP_009362317__Ranid_herpesvirus_3__1987509__D187-355
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 22.0 | 3.61e-01 | 78.6% | 80.7% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.61 | 38.0 | 4.29e-01 | 74.5% | 83.0% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.58 | 36.0 | 4.25e-01 | 71.0% | 90.0% |
| 1ospO01 | 2.40.128.160 | Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) | 0.57 | 32.0 | 3.69e-01 | 74.5% | 75.2% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 36.0 | 4.17e-01 | 70.3% | 91.3% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.55 | 36.0 | 3.79e-01 | 82.8% | 73.8% |
| 4rs6A01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.54 | 34.0 | 3.70e-01 | 77.9% | 76.3% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 36.0 | 3.61e-01 | 75.2% | 66.4% |
| 1dzkA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 36.0 | 3.61e-01 | 75.2% | 66.2% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.65e-01 | 74.5% | 63.3% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 36.0 | 3.69e-01 | 75.2% | 71.1% |
| 1e5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 35.0 | 3.52e-01 | 75.2% | 65.8% |
| 2vxtI00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 43.0 | 4.23e-01 | 91.7% | 100.0% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 31.0 | 2.92e-01 | 74.5% | 50.9% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.50 | 40.0 | 3.74e-01 | 94.5% | 68.9% |
| 4wfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 34.0 | 3.35e-01 | 75.2% | 64.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3715024 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.62 | 33.0 | 4.06e-01 | 77.9% | 82.2% |
| 3684759 | 331.3.1.10 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL | 0.58 | 37.0 | 3.51e-01 | 73.1% | 53.5% |
| 4666231 | 9.1.1.14 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS | 0.58 | 42.0 | 4.00e-01 | 75.2% | 82.9% |
| 2439577 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.57 | 39.0 | 4.28e-01 | 70.3% | 86.6% |
| 3490377 | 331.19.1.3 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C | 0.57 | 30.0 | 4.00e-01 | 86.2% | 95.0% |
| 3279448 | 9.1.1.17 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF | 0.54 | 34.0 | 3.54e-01 | 75.9% | 67.7% |
| 3930831 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.54 | 38.0 | 3.02e-01 | 71.0% | 93.2% |
| 2875609 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.53 | 36.0 | 3.60e-01 | 75.2% | 67.3% |
| 3781849 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.53 | 31.0 | 3.80e-01 | 89.0% | 92.2% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.53 | 35.0 | 3.97e-01 | 77.2% | 89.1% |
| 4671100 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 35.0 | 3.49e-01 | 75.2% | 63.2% |
| 4139943 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 35.0 | 3.48e-01 | 75.2% | 65.2% |
| 4483138 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.50 | 31.0 | 3.66e-01 | 89.0% | 89.0% |
| 4927080 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 32.0 | 3.33e-01 | 73.8% | 66.9% |
D3
medium
residues 10-53
D4
medium
residues 219-262_408-426