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proteinase

Euk-Vir

Grapevine_deformation_virus

proteinase__YP_006347731__Grapevine_deformation_virus__233784

Identity

Accession:
YP_006347731 ↗
Protein ID:
proteinase
Kingdom:
euk

Quality

90.5 mean pLDDT

Cluster

View cluster (187 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-103
PDB
Domain cluster: rep: NIa-VPg-Pro_protein__YP_002956094__Triticum_mosaic_virus__431317__D201-288_375-394
D2 high residues 111-209
PDB
Domain cluster: rep: putative_3C_peptidase__YP_009553718__tremovirus_B1__2058161__D98-201
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 74.0 7.38e-01 100.0% 96.1%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 65.0 6.65e-01 100.0% 89.4%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 64.0 6.60e-01 100.0% 88.4%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 61.0 6.20e-01 100.0% 83.8%
1lvbA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 59.0 5.79e-01 100.0% 74.1%
1lvoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 54.0 5.76e-01 100.0% 83.0%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 61.0 6.06e-01 100.0% 83.3%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 57.0 5.61e-01 100.0% 81.9%
1autC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 62.0 5.56e-01 100.0% 83.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 62.0 4.82e-01 100.0% 69.1%
3f1sB03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 57.0 5.48e-01 100.0% 80.9%
5pabH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 61.0 5.59e-01 100.0% 82.7%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 61.0 5.63e-01 100.0% 93.4%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 60.0 5.11e-01 100.0% 69.5%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.65 35.0 4.49e-01 71.7% 96.2%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 60.0 5.33e-01 100.0% 86.9%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 59.0 5.11e-01 100.0% 79.5%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 58.0 5.57e-01 100.0% 86.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 59.0 5.41e-01 100.0% 88.1%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 58.0 4.53e-01 100.0% 64.4%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 57.0 4.54e-01 100.0% 70.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 40.0 4.71e-01 84.8% 100.0%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 51.0 4.75e-01 92.9% 80.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 35.0 3.93e-01 70.7% 77.6%
6brbD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.98e-01 88.9% 74.7%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 36.0 4.02e-01 74.7% 82.9%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.51 42.0 4.25e-01 88.9% 100.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 37.0 2.88e-01 76.8% 87.2%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.51 38.0 3.54e-01 80.8% 95.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3066474 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.84 70.0 5.37e-01 100.0% 41.8%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.80 65.0 4.70e-01 100.0% 32.7%
3694033 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 62.0 5.49e-01 100.0% 58.6%
3960372 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 56.0 6.02e-01 99.0% 85.9%
3280955 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 69.0 5.23e-01 100.0% 44.9%
4620869 1.1.5.57 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.74 69.0 4.60e-01 100.0% 33.0%
3509725 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 63.0 4.64e-01 100.0% 37.9%
3576746 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.72 67.0 5.34e-01 100.0% 59.5%
4960051 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 59.0 4.85e-01 97.0% 50.6%
5016520 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.71 66.0 4.88e-01 100.0% 42.1%
3367044 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.70 61.0 4.44e-01 100.0% 35.8%
3236876 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.70 63.0 4.43e-01 100.0% 34.3%
3180837 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.69 63.0 4.65e-01 100.0% 80.8%
3507692 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 63.0 5.42e-01 100.0% 69.3%
3503044 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.68 63.0 5.04e-01 100.0% 56.2%
3510405 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 61.0 4.83e-01 100.0% 59.0%
3501491 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 62.0 5.55e-01 100.0% 74.8%
3504279 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.67 62.0 4.53e-01 100.0% 43.1%
3504078 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 62.0 4.49e-01 100.0% 41.8%
3515391 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 62.0 4.54e-01 100.0% 44.0%
3509647 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.67 61.0 4.24e-01 100.0% 33.0%
3509500 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 59.0 4.33e-01 100.0% 43.7%
3502140 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 60.0 4.41e-01 100.0% 43.6%
3801890 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 60.0 4.68e-01 100.0% 80.0%
5000379 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.64 34.0 4.00e-01 92.9% 74.3%
3597134 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 55.0 3.91e-01 94.9% 37.3%
3787702 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.61 44.0 3.81e-01 74.7% 99.4%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 45.0 3.84e-01 81.8% 57.5%
5032784 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 46.0 4.73e-01 100.0% 89.5%
3791476 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.57 47.0 3.39e-01 86.9% 48.5%
3594682 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 45.0 3.29e-01 88.9% 51.9%
3949274 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 48.0 4.60e-01 93.9% 89.6%
3924486 2004.1.1.184 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.56 43.0 2.78e-01 82.8% 20.8%
3705440 206.1.1.13 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Alpha_kinase 0.56 45.0 3.28e-01 88.9% 53.3%
4022210 9.1.1.33 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF1365 0.55 40.0 3.20e-01 74.7% 95.4%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.02e-01 84.8% 87.2%
4978132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 39.0 3.63e-01 81.8% 82.4%
3490255 11.1.4.114 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 0.51 40.0 4.08e-01 100.0% 88.0%