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putative_5-3_exonuclease
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_5-3_exonuclease__YP_003969937__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969937 ↗
- Protein ID:
- putative_5-3_exonuclease
- Kingdom:
- euk
Quality
77.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-95_139-244
Domain cluster:
rep: Hypothetical_protein_SPPV_50__NP_659626__Sheeppox_virus__10266__D1-82_143-236
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03159.25 best | XRN_N | 54.7 | 1.40e-14 | 46.9% | 38.2% |
| PF03159.25 | XRN_N | 80.4 | 2.00e-22 | 44.9% | 39.0% |
D2
high
residues 470-551
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17846.7 best | XRN_M | 64.5 | 1.30e-17 | 100.0% | 18.1% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 47.0 | 3.44e-01 | 82.9% | 87.3% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.54e-01 | 82.9% | 85.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3235178 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.93 | 88.0 | 5.73e-01 | 100.0% | 27.9% |
| 3175375 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.92 | 87.0 | 5.54e-01 | 100.0% | 24.4% |
| 4144327 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.92 | 87.0 | 5.64e-01 | 100.0% | 26.8% |
| 3592851 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.92 | 87.0 | 5.64e-01 | 100.0% | 27.2% |
| 3473140 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.92 | 87.0 | 5.66e-01 | 100.0% | 27.7% |
| 3479825 | 3279.1.1.0 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases | 0.92 | 87.0 | 5.58e-01 | 100.0% | 25.9% |
| 3499830 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.92 | 87.0 | 5.60e-01 | 100.0% | 26.3% |
| 3269897 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.90 | 84.0 | 5.44e-01 | 100.0% | 25.5% |
| 3684346 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.90 | 85.0 | 5.49e-01 | 100.0% | 28.3% |
| 3716031 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.89 | 83.0 | 5.49e-01 | 100.0% | 29.0% |
| 4027649 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.88 | 82.0 | 5.50e-01 | 100.0% | 29.3% |
| 3608857 | 3279.1.1.1 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › XRN_M | 0.86 | 74.0 | 4.95e-01 | 97.6% | 26.2% |
| 3595158 | 3279.1.1.0 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases | 0.85 | 74.0 | 4.96e-01 | 97.6% | 27.1% |
| 3600228 | 3279.1.1.0 ↗ | alpha arrays › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases › Helical domain in 5'->3' exoribonucleases | 0.85 | 78.0 | 5.20e-01 | 100.0% | 28.2% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 27.0 | 2.96e-01 | 93.9% | 53.8% |
| 3520689 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.53 | 36.0 | 2.49e-01 | 70.7% | 98.7% |
| None | — | 0.51 | 43.0 | 2.75e-01 | 100.0% | 54.3% |
D3
medium
residues 245-351
Domain cluster:
rep: 5-3_exoribonuclease__YP_009001338__Pithovirus_sibericum__1450746__D237-336
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17846.7 best | XRN_M | 51.9 | 9.00e-14 | 83.2% | 17.2% |