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putative_ADP-ribosyl_glycohydrolase

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

putative_ADP-ribosyl_glycohydrolase__YP_003986951__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003986951 ↗
Protein ID:
putative_ADP-ribosyl_glycohydrolase
Kingdom:
euk

Quality

73.5 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 174-239_424-481
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gmqA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.70 35.0 4.03e-01 92.7% 64.1%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 37.0 3.21e-01 70.2% 43.6%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 33.0 2.97e-01 72.6% 40.4%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 35.0 3.07e-01 71.0% 40.6%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 38.0 3.25e-01 72.6% 62.0%
5bn3A04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.51 33.0 3.25e-01 100.0% 57.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3788953 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 34.0 3.84e-01 91.9% 81.1%
D2 medium residues 240-423
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03747.20 best ADP_ribosyl_GH 55.1 1.40e-14 98.9% 38.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6g28A00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.87 84.0 6.46e-01 100.0% 51.3%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.65 32.0 4.25e-01 70.7% 86.9%
3zuxA00 1.20.1530.20 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › 0.56 43.0 3.69e-01 81.0% 76.3%
3fajA00 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.56 29.0 3.79e-01 76.6% 90.1%
4mndA02 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.53 40.0 4.02e-01 82.1% 76.4%
3juiA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 38.0 3.95e-01 75.0% 84.5%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 37.0 3.54e-01 71.2% 93.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270588 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.89 86.0 6.60e-01 100.0% 55.4%
2413790 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.87 84.0 6.47e-01 100.0% 51.0%
4936464 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.84 66.0 5.43e-01 100.0% 48.1%
3982356 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.84 68.0 5.50e-01 100.0% 46.7%
4014369 528.1.1.0 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase 0.83 72.0 5.70e-01 100.0% 48.1%
3900652 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.82 64.0 5.26e-01 100.0% 46.9%
4994742 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.68 64.0 5.31e-01 100.0% 59.5%
3710333 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 30.0 3.70e-01 93.5% 83.6%
4956698 7011.1.1.0 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.50 38.0 3.43e-01 100.0% 56.5%