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putative_ADP-ribosyl_glycohydrolase

Euk-Vir

Acanthamoeba_polyphaga_mimivirus

putative_ADP-ribosyl_glycohydrolase__YP_003987058__Acanthamoeba_polyphaga_mimivirus__212035

Identity

Accession:
YP_003987058 ↗
Protein ID:
putative_ADP-ribosyl_glycohydrolase
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Mimiviridae› Mimivirus› Acanthamoeba_polyphaga_mimivirus

TaxID: 212035

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-24_126-294
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03747.20 best ADP_ribosyl_GH 82.4 6.40e-23 87.6% 56.1%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fozA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.80 76.0 6.13e-01 99.0% 90.6%
1t5jA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.80 76.0 6.37e-01 99.5% 89.7%
2yzvA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.76 72.0 6.22e-01 100.0% 89.2%
2wocA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.74 69.0 5.93e-01 98.4% 88.3%
3cr3A00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.57 51.0 5.19e-01 100.0% 97.9%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 31.0 3.68e-01 95.9% 77.3%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 29.0 3.47e-01 81.3% 72.7%
4nwpD00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.54 32.0 3.53e-01 100.0% 71.8%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 48.0 3.93e-01 100.0% 70.9%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.51 29.0 3.24e-01 80.3% 68.0%
1zklA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.51 45.0 3.85e-01 97.4% 75.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4146 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.80 76.0 6.37e-01 99.5% 89.7%
4936464 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.78 74.0 6.19e-01 99.5% 87.1%
4014369 528.1.1.0 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase 0.78 73.0 5.90e-01 98.4% 91.9%
3283020 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.77 72.0 5.85e-01 98.4% 90.6%
3694335 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.73 64.0 5.75e-01 91.7% 83.1%
5013369 3076.1.1.1 ↗ alpha arrays › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › Putative triphosphoribosyl-dephospho-coA synthase › CitG 0.61 50.0 4.32e-01 86.0% 99.3%
4968367 633.11.1.0 ↗ alpha bundles › Bromodomain-like › Nqo1C-terminal domain-like › Nqo1C-terminal domain-like 0.52 28.0 3.68e-01 94.8% 94.3%
D2 medium residues 57-125_295-330
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03747.20 best ADP_ribosyl_GH 48.3 1.60e-12 81.0% 24.0%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wocA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.69 64.0 4.58e-01 100.0% 81.1%
1t5jA00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.67 62.0 4.37e-01 100.0% 90.7%
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.55 32.0 3.60e-01 96.2% 75.0%
1z6tA03 1.10.8.430 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors 0.54 26.0 2.86e-01 93.3% 53.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4000377 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.83 79.0 5.35e-01 100.0% 81.5%
3991110 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.82 77.0 5.28e-01 100.0% 82.2%
4625632 528.1.1.1 ↗ alpha bundles › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP-ribosylglycohydrolase › ADP_ribosyl_GH 0.69 65.0 4.58e-01 100.0% 79.9%
3698916 148.1.3.355 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ammonium_transp 0.59 34.0 2.90e-01 91.4% 35.8%
3992851 193.1.1.3 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Ndc80_HEC 0.53 36.0 3.83e-01 98.1% 78.9%
3928278 3223.1.1.1 ↗ beta sandwiches › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › Amiloride-sensitive cation channel 2 › ASC 0.52 43.0 3.01e-01 92.4% 60.5%
5058395 129.1.1.5 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct 0.51 37.0 3.03e-01 76.2% 82.9%