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putative_ATP-dependent_RNA_helicase
Euk-VirAcanthamoeba_polyphaga_mimivirus
putative_ATP-dependent_RNA_helicase__YP_003987078__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003987078 ↗
- Protein ID:
- putative_ATP-dependent_RNA_helicase
- Kingdom:
- euk
Quality
84.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
View cluster (106 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 63-99_152-283_532-562
Domain cluster:
rep: putative_superfamily_II_helicase_VV_D6-like_early_transcription_factor_small_subunit__YP_003969741__Cafeteria_roenbergensis_virus_BV-PW1__693272__D226-238_252-327_662-697
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 24.0 | 6.40e-05 | 59.5% | 87.8% |
| PF00270.36 | DEAD | 26.3 | 8.00e-06 | 37.0% | 40.1% |
D2
medium
residues 100-151
D3
medium
residues 284-296_375-531
Domain cluster:
rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00271.38 best | Helicase_C | 32.5 | 1.20e-07 | 74.7% | 89.1% |
D4
medium
residues 297-374
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.64 | 43.0 | 4.47e-01 | 100.0% | 74.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 37.0 | 4.15e-01 | 94.9% | 98.3% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 41.0 | 3.80e-01 | 100.0% | 64.7% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 34.0 | 3.76e-01 | 97.4% | 94.4% |
| 4jb3A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 27.0 | 2.84e-01 | 74.4% | 51.4% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3476632 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.67 | 62.0 | 4.10e-01 | 100.0% | 45.2% |
| None | — | 0.66 | 52.0 | 3.27e-01 | 100.0% | 18.3% | |
| 3473285 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.58 | 52.0 | 3.06e-01 | 100.0% | 12.4% |
| 3638394 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 51.0 | 3.43e-01 | 100.0% | 28.6% |
| 3935542 | 4016.1.1.1 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV | 0.54 | 38.0 | 3.09e-01 | 74.4% | 78.7% |