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putative_B_family_DNA_polymerase
Euk-VirAureococcus_anophagefferens_virus
putative_B_family_DNA_polymerase__YP_009052217__Aureococcus_anophagefferens_virus__1474867
Identity
- Accession:
- YP_009052217 ↗
- Protein ID:
- putative_B_family_DNA_polymerase
- Kingdom:
- euk
Quality
72.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Schizomimiviridae›
Kratosvirus›
Aureococcus_anophagefferens_virus
TaxID: 1474867
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-212
Domain cluster:
rep: DNA_polymerase__YP_010084862__Shrimp_hemocyte_iridescent_virus__2039780__D2-200
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.77 | 31.0 | 4.28e-01 | 100.0% | 71.4% |
| 2ypyA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.70 | 37.0 | 4.26e-01 | 84.0% | 68.7% |
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.69 | 36.0 | 4.95e-01 | 70.2% | 100.0% |
| 2cqiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.69 | 36.0 | 4.61e-01 | 77.3% | 86.4% |
| 1wi8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.67 | 31.0 | 4.57e-01 | 70.2% | 100.0% |
| 1l3kA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 32.0 | 4.64e-01 | 72.9% | 100.0% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 37.0 | 4.58e-01 | 73.5% | 90.6% |
| 2op5B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 37.0 | 4.83e-01 | 72.9% | 100.0% |
| 2dnmA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.65 | 37.0 | 4.84e-01 | 81.2% | 100.0% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 33.0 | 4.54e-01 | 92.8% | 98.9% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 36.0 | 4.65e-01 | 72.9% | 100.0% |
| 1b3tA00 | 3.30.70.390 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain | 0.64 | 40.0 | 4.39e-01 | 94.5% | 75.5% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 33.0 | 4.54e-01 | 71.3% | 100.0% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 37.0 | 4.71e-01 | 94.5% | 99.0% |
| 2cz4A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 34.0 | 4.49e-01 | 84.5% | 94.9% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 33.0 | 4.37e-01 | 85.1% | 93.9% |
| 3lo3A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 34.0 | 4.47e-01 | 71.3% | 100.0% |
| 3h7hB00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.62 | 32.0 | 4.17e-01 | 93.9% | 91.6% |
| 2j5aA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.61 | 36.0 | 4.46e-01 | 92.8% | 96.2% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 35.0 | 4.50e-01 | 82.9% | 99.0% |
| 1q8bA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 32.0 | 4.30e-01 | 71.8% | 97.8% |
| 2n3lA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 30.0 | 4.08e-01 | 71.3% | 93.3% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.61 | 35.0 | 4.48e-01 | 73.5% | 100.0% |
| 2qycA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 4.37e-01 | 93.9% | 100.0% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 32.0 | 4.20e-01 | 94.5% | 97.0% |
| 3qjlA01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 38.0 | 4.59e-01 | 82.3% | 100.0% |
| 3w9iA06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.57 | 33.0 | 4.24e-01 | 72.4% | 100.0% |
| 1r6yA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 4.26e-01 | 74.0% | 100.0% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.57 | 37.0 | 4.40e-01 | 89.0% | 96.7% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 33.0 | 4.18e-01 | 70.7% | 100.0% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.56 | 32.0 | 4.15e-01 | 93.9% | 100.0% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 4.05e-01 | 94.5% | 95.2% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.56 | 33.0 | 4.05e-01 | 75.7% | 89.9% |
| 5xzqF00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 4.12e-01 | 74.0% | 100.0% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 34.0 | 3.94e-01 | 82.9% | 83.8% |
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 36.0 | 4.28e-01 | 95.0% | 95.9% |
| 3bb5A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 4.12e-01 | 73.5% | 100.0% |
| 1x7vA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 32.0 | 4.03e-01 | 93.9% | 100.0% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 27.0 | 3.85e-01 | 70.2% | 100.0% |
| 8b6jb01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 39.0 | 3.75e-01 | 72.9% | 86.8% |
| 4xeaA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 38.0 | 3.52e-01 | 72.9% | 78.4% |
| 5huoE01 | 3.90.1170.20 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain | 0.53 | 32.0 | 3.66e-01 | 93.9% | 77.7% |
| 1g87A02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.53 | 37.0 | 3.96e-01 | 95.6% | 81.8% |
| 5xyiU00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 29.0 | 3.84e-01 | 71.3% | 100.0% |
| 5fm5P00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 25.0 | 3.26e-01 | 70.7% | 79.6% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 4.00e-01 | 71.8% | 100.0% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 38.0 | 3.63e-01 | 77.3% | 90.4% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 33.0 | 3.90e-01 | 71.8% | 100.0% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3496491 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.90 | 35.0 | 4.75e-01 | 96.7% | 66.7% |
| 4944520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.89 | 69.0 | 6.30e-01 | 96.7% | 63.0% |
| 4972474 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.88 | 72.0 | 4.69e-01 | 100.0% | 22.5% |
| 4997715 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.87 | 70.0 | 7.29e-01 | 100.0% | 88.8% |
| 4500300 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.86 | 68.0 | 5.14e-01 | 100.0% | 37.9% |
| 4942684 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 70.0 | 7.21e-01 | 98.9% | 88.8% |
| 4299557 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 70.0 | 6.79e-01 | 100.0% | 80.0% |
| 3788812 | 304.114.1.6 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › DNA_pol_B_exo1 | 0.83 | 74.0 | 6.59e-01 | 100.0% | 70.0% |
| 3800859 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 75.0 | 7.19e-01 | 96.7% | 85.5% |
| 5023017 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 67.0 | 6.28e-01 | 100.0% | 71.2% |
| 5019480 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.81 | 73.0 | 4.68e-01 | 100.0% | 23.4% |
| 3192875 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.79 | 75.0 | 5.35e-01 | 100.0% | 37.3% |
| 3794217 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 75.0 | 5.22e-01 | 100.0% | 41.1% |
| 4988803 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.67 | 62.0 | 4.65e-01 | 96.7% | 84.3% |
| 3608140 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.65 | 42.0 | 4.81e-01 | 84.0% | 86.6% |
| 4230728 | 304.4.1.70 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › PF29828 | 0.64 | 36.0 | 4.20e-01 | 72.4% | 75.4% |
| 4808079 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.64 | 37.0 | 4.75e-01 | 95.0% | 98.1% |
| 3236680 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 42.0 | 4.39e-01 | 85.1% | 72.4% |
| 3724748 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.62 | 41.0 | 4.94e-01 | 94.5% | 100.0% |
| 4024919 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.62 | 41.0 | 4.87e-01 | 86.2% | 98.3% |
| 3256556 | 304.9.1.36 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 | 0.62 | 34.0 | 4.45e-01 | 82.3% | 95.1% |
| 3966036 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.61 | 37.0 | 4.58e-01 | 74.6% | 98.2% |
| 5032777 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 35.0 | 4.46e-01 | 73.5% | 100.0% |
| 3182863 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 36.0 | 4.45e-01 | 91.7% | 93.0% |
| 5076410 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.60 | 56.0 | 4.27e-01 | 96.7% | 84.6% |
| 3944541 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.60 | 36.0 | 4.51e-01 | 73.5% | 97.3% |
| 3787850 | 304.159.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB | 0.60 | 37.0 | 4.56e-01 | 83.4% | 100.0% |
| 3680639 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 37.0 | 4.44e-01 | 82.3% | 92.5% |
| 3725466 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.59 | 40.0 | 4.74e-01 | 85.1% | 100.0% |
| 3730752 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 35.0 | 4.40e-01 | 73.5% | 100.0% |
| 3727497 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.59 | 39.0 | 4.65e-01 | 94.5% | 100.0% |
| 3729608 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 38.0 | 4.45e-01 | 82.9% | 93.6% |
| 3583072 | 304.34.1.0 ↗ | a+b two layers › Alpha-beta plaits › Nucleoside diphosphate kinases › Nucleoside diphosphate kinases | 0.58 | 35.0 | 4.24e-01 | 75.7% | 92.2% |
| 3584745 | 304.127.1.0 ↗ | a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain | 0.58 | 37.0 | 4.53e-01 | 70.2% | 100.0% |
| 3839120 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.58 | 33.0 | 4.03e-01 | 75.7% | 85.0% |
| 4072538 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.58 | 33.0 | 4.02e-01 | 75.1% | 85.0% |
| 3593297 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 35.0 | 4.40e-01 | 92.8% | 100.0% |
| 3368695 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 49.0 | 3.70e-01 | 88.4% | 85.1% |
| 3165343 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.57 | 34.0 | 4.01e-01 | 75.1% | 84.0% |
| 5175 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.57 | 33.0 | 4.22e-01 | 93.9% | 100.0% |
| 3285320 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.57 | 33.0 | 4.11e-01 | 84.0% | 93.6% |
| 4637248 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.57 | 33.0 | 3.96e-01 | 94.5% | 85.8% |
| 2986050 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 37.0 | 4.24e-01 | 95.0% | 90.8% |
| 3210385 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 37.0 | 4.32e-01 | 93.9% | 94.5% |
| 4319385 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.56 | 33.0 | 3.90e-01 | 75.7% | 84.0% |
| 4680481 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.56 | 34.0 | 3.99e-01 | 75.7% | 85.4% |
| 3721662 | 309.1.1.2 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C | 0.55 | 39.0 | 3.40e-01 | 71.8% | 85.2% |
| 4022739 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.55 | 32.0 | 3.88e-01 | 82.3% | 86.7% |
| 3170546 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 36.0 | 4.20e-01 | 84.5% | 95.2% |
| 3718206 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.55 | 34.0 | 4.16e-01 | 73.5% | 100.0% |
| 3687186 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 35.0 | 4.20e-01 | 93.9% | 100.0% |
| 5050957 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.53 | 46.0 | 3.64e-01 | 92.8% | 90.5% |
| 4016469 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 36.0 | 4.18e-01 | 93.4% | 99.2% |
| 2167751 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.52 | 34.0 | 4.07e-01 | 71.8% | 98.3% |
| 3176550 | 304.9.1.74 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nab6_mRNP_bdg | 0.52 | 39.0 | 3.95e-01 | 82.9% | 76.7% |
| 3058011 | 304.17.1.1 ↗ | a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › NusG | 0.52 | 33.0 | 4.01e-01 | 94.5% | 96.7% |
| None | — | 0.52 | 46.0 | 3.08e-01 | 93.4% | 75.6% | |
| 3312048 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 33.0 | 3.94e-01 | 70.2% | 99.1% |
| 3700802 | 304.20.1.0 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain | 0.51 | 37.0 | 4.09e-01 | 75.1% | 96.6% |
D2
high
residues 216-227_346-484_579-616
Domain cluster:
rep: DNA_polymerase_catalytic_subunit__YP_401712__Human_gammaherpesvirus_4__10376__D288-457
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03104.26 best | DNA_pol_B_exo1 | 69.9 | 3.10e-19 | 82.0% | 70.7% |
D3
high
residues 238-337
D4
high
residues 490-574
Domain cluster:
rep: putative_structural_protein__YP_009337347__Beihai_tiger_crab_virus_1__1922711__D215-316
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.75 | 66.0 | 6.30e-01 | 98.8% | 82.5% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.72 | 66.0 | 5.66e-01 | 100.0% | 70.2% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 58.0 | 6.03e-01 | 92.9% | 94.9% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 56.0 | 5.88e-01 | 91.8% | 96.0% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 62.0 | 5.66e-01 | 97.6% | 95.5% |
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 65.0 | 6.33e-01 | 100.0% | 92.3% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 61.0 | 5.80e-01 | 95.3% | 96.0% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 58.0 | 5.88e-01 | 92.9% | 98.8% |
| 3a35A02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 61.0 | 6.01e-01 | 100.0% | 91.3% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 58.0 | 5.34e-01 | 95.3% | 93.7% |
| 2zzeA03 | 2.40.30.130 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 54.0 | 5.23e-01 | 94.1% | 77.6% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 58.0 | 5.64e-01 | 98.8% | 97.9% |
| 1a8pA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 56.0 | 5.47e-01 | 95.3% | 98.9% |
| 2dy3D01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.66 | 55.0 | 4.91e-01 | 98.8% | 64.2% |
| 3op1A02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.66 | 55.0 | 5.08e-01 | 92.9% | 72.1% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 58.0 | 5.77e-01 | 100.0% | 94.4% |
| 1vwxf00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.64 | 57.0 | 5.29e-01 | 100.0% | 92.7% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.63 | 50.0 | 4.59e-01 | 92.9% | 65.2% |
| 3kw3B01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.63 | 56.0 | 4.70e-01 | 100.0% | 63.9% |
| 4eclA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.62 | 56.0 | 4.60e-01 | 100.0% | 62.9% |
| 4aq1A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 48.0 | 4.68e-01 | 91.8% | 75.5% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.62 | 53.0 | 4.54e-01 | 97.6% | 66.9% |
| 4lusB01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.61 | 55.0 | 4.56e-01 | 100.0% | 61.1% |
| 4n0rA03 | 2.60.40.3950 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 53.0 | 4.87e-01 | 98.8% | 98.2% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.60 | 52.0 | 4.38e-01 | 100.0% | 64.3% |
| 3cnrB00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 48.0 | 4.68e-01 | 89.4% | 96.8% |
| 2e3vA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 48.0 | 4.52e-01 | 98.8% | 76.7% |
| 1k85A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 4.03e-01 | 98.8% | 78.4% |
| 1p7hL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 47.0 | 4.37e-01 | 95.3% | 83.2% |
| 7xc8A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.54 | 44.0 | 4.22e-01 | 89.4% | 100.0% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.40e-01 | 94.1% | 87.1% |
| 1mfnA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 42.0 | 4.11e-01 | 94.1% | 78.5% |
| 3r8qA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.18e-01 | 94.1% | 82.0% |
| 7mjrA04 | 2.60.40.1790 | Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve | 0.53 | 40.0 | 4.00e-01 | 92.9% | 77.2% |
| 1bpvA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 4.09e-01 | 95.3% | 74.0% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.06e-01 | 92.9% | 76.2% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.53 | 45.0 | 3.93e-01 | 100.0% | 68.8% |
| 4pbxA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 4.05e-01 | 97.6% | 80.4% |
| 5j11C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.72e-01 | 91.8% | 69.4% |
| 3u6xS00 | 2.60.40.3320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.78e-01 | 84.7% | 87.6% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.83e-01 | 95.3% | 68.9% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.94e-01 | 94.1% | 80.5% |
| 3gzaB02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.85e-01 | 94.1% | 72.4% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.83e-01 | 94.1% | 70.5% |
| 5eh1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.84e-01 | 89.4% | 74.7% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.81e-01 | 89.4% | 80.0% |
| 4oq8A00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.51 | 43.0 | 3.69e-01 | 97.6% | 80.6% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.85e-01 | 94.1% | 82.2% |
| 3cxeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 4.01e-01 | 97.6% | 81.6% |
| 5k3xA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.78e-01 | 94.1% | 69.9% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.87e-01 | 95.3% | 78.7% |
| 4bfoA00 | 2.60.40.2440 | Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain | 0.50 | 41.0 | 3.87e-01 | 91.8% | 74.5% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3240264 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 72.0 | 6.66e-01 | 100.0% | 100.0% |
| 3291083 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.73 | 66.0 | 6.51e-01 | 97.6% | 93.3% |
| 3247934 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.72 | 63.0 | 6.12e-01 | 97.6% | 97.9% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.71 | 61.0 | 5.68e-01 | 94.1% | 88.6% |
| 3931783 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.71 | 64.0 | 6.17e-01 | 98.8% | 100.0% |
| 4218574 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 59.0 | 5.67e-01 | 90.6% | 95.8% |
| 4963784 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.69 | 59.0 | 5.59e-01 | 92.9% | 93.0% |
| 4366483 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 61.0 | 6.13e-01 | 100.0% | 97.6% |
| 3614391 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 61.0 | 5.77e-01 | 97.6% | 96.0% |
| 4946798 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 61.0 | 5.81e-01 | 98.8% | 92.0% |
| 4854964 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 57.0 | 5.68e-01 | 94.1% | 88.4% |
| 3193183 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.67 | 60.0 | 5.36e-01 | 100.0% | 95.8% |
| 1918525 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 58.0 | 5.56e-01 | 98.8% | 94.0% |
| 3389361 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 59.0 | 5.75e-01 | 100.0% | 91.6% |
| 3255732 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 57.0 | 5.57e-01 | 98.8% | 95.8% |
| 4532022 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 58.0 | 4.91e-01 | 100.0% | 80.0% |
| 4136251 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.65 | 54.0 | 5.08e-01 | 91.8% | 87.6% |
| 4943928 | 1.1.7.140 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 | 0.65 | 59.0 | 5.12e-01 | 100.0% | 98.5% |
| 4958674 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.65 | 55.0 | 5.32e-01 | 97.6% | 91.0% |
| 3271313 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 51.0 | 5.15e-01 | 94.1% | 85.9% |
| 3236163 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.64 | 55.0 | 5.19e-01 | 98.8% | 96.2% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.63 | 58.0 | 5.59e-01 | 100.0% | 98.9% |
| 3660388 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 53.0 | 5.19e-01 | 97.6% | 86.7% |
| 4426297 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.63 | 54.0 | 4.74e-01 | 97.6% | 67.7% |
| 4117582 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.62 | 53.0 | 4.78e-01 | 98.8% | 72.0% |
| 3251398 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.61 | 50.0 | 4.90e-01 | 91.8% | 82.2% |
| 3265575 | 11.1.1.698 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 | 0.60 | 47.0 | 4.80e-01 | 92.9% | 87.1% |
| 5009352 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 44.0 | 4.41e-01 | 92.9% | 77.6% |
| 3230881 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 49.0 | 3.98e-01 | 95.3% | 82.4% |
| 3929720 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.57 | 46.0 | 4.37e-01 | 91.8% | 81.9% |
| 3447948 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.56 | 44.0 | 4.11e-01 | 87.1% | 87.3% |
| 1851176 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.55 | 47.0 | 4.15e-01 | 98.8% | 70.6% |
| 3392702 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.55 | 47.0 | 3.55e-01 | 95.3% | 42.3% |
| 3337313 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.55 | 47.0 | 4.23e-01 | 98.8% | 68.0% |
| 3933359 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 41.0 | 4.02e-01 | 94.1% | 72.6% |
| 3268937 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.28e-01 | 94.1% | 82.9% |
| 3460711 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.54 | 46.0 | 4.35e-01 | 96.5% | 97.1% |
| 3263949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.27e-01 | 91.8% | 81.1% |
| 3224127 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.53 | 42.0 | 4.16e-01 | 87.1% | 91.1% |
| 3550448 | 11.1.1.1014 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30509 | 0.53 | 43.0 | 3.93e-01 | 97.6% | 65.0% |
| 3535997 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.53 | 46.0 | 3.74e-01 | 98.8% | 53.9% |
| 1146571 | 5092.1.1.8 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › TAdV_Fibre-like_head | 0.53 | 45.0 | 3.93e-01 | 100.0% | 68.8% |
| 3894725 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.52 | 46.0 | 3.98e-01 | 100.0% | 64.4% |
| 3267385 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.52 | 44.0 | 3.82e-01 | 100.0% | 58.6% |
| 1712027 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 41.0 | 3.92e-01 | 95.3% | 74.5% |
| 32412 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.52 | 42.0 | 3.88e-01 | 89.4% | 79.6% |
| 5020572 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 4.15e-01 | 94.1% | 86.7% |
| 3368356 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.52 | 42.0 | 4.02e-01 | 90.6% | 98.0% |
| 3887955 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.95e-01 | 95.3% | 75.8% |
| 3794175 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 39.0 | 3.78e-01 | 94.1% | 72.6% |
| 3218594 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 40.0 | 4.01e-01 | 94.1% | 82.4% |
| 4995214 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 3.93e-01 | 90.6% | 77.8% |
| 4944073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.82e-01 | 89.4% | 81.7% |
| 3294168 | 11.1.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C | 0.52 | 42.0 | 3.95e-01 | 92.9% | 90.9% |
| 3919257 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.51 | 44.0 | 3.57e-01 | 100.0% | 55.6% |
| 3275234 | 11.1.4.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 | 0.51 | 43.0 | 4.02e-01 | 94.1% | 75.5% |
| 3530547 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 39.0 | 3.90e-01 | 91.8% | 78.9% |
| 1878 | 11.1.5.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM_2 | 0.51 | 43.0 | 4.01e-01 | 98.8% | 94.5% |
| 3854078 | 12.5.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS | 0.50 | 43.0 | 3.49e-01 | 100.0% | 47.8% |
D5
high
residues 887-1048
D6
medium
residues 666-709_772-782_867-879_1061-1159
Domain cluster:
rep: DNA_polymerase__YP_008052566__Phaeocystis_globosa_virus__251749__D762-780_942-1082
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00136.27 best | DNA_pol_B | 50.4 | 2.20e-13 | 73.7% | 22.5% |
| PF00136.27 | DNA_pol_B | 35.6 | 7.00e-09 | 29.3% | 8.8% |
D7
medium
residues 1160-1331