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putative_C1_protein

Euk-Vir

Ageratum_leaf_curl_Cameroon_betasatellite

putative_C1_protein__YP_002791885__Ageratum_leaf_curl_Cameroon_betasatellite__635076

Identity

Accession:
YP_002791885 ↗
Protein ID:
putative_C1_protein
Kingdom:
euk

Quality

78.4 mean pLDDT

Taxonomy

Tolecusatellitidae› Betasatellite› Betasatellite_ageracameroonense

TaxID: 635076

Cluster

View cluster (104 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-116
PDB
Domain cluster: rep: putative_betaC1_protein__YP_001293194__Honeysuckle_yellow_vein_mosaic_disease_associated_satellite_DNA_beta__417192__D2-114
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09593.16 best Pathogen_betaC1 117.5 4.30e-34 100.0% 97.4%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.81 40.0 3.63e-01 100.0% 36.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.79 38.0 5.24e-01 97.4% 91.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.78 37.0 5.22e-01 92.1% 94.6%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.77 39.0 3.62e-01 97.4% 40.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.75 33.0 4.46e-01 87.7% 78.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.71 35.0 4.59e-01 93.0% 85.7%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.69 43.0 4.13e-01 100.0% 56.7%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 56.0 4.10e-01 96.5% 64.7%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.64 37.0 3.67e-01 100.0% 54.1%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 44.0 2.73e-01 100.0% 15.4%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 31.0 3.16e-01 92.1% 51.4%
2rkcA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 41.0 2.86e-01 96.5% 22.8%
1t5rB00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.54 50.0 3.72e-01 100.0% 76.0%
4bd4A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.53 39.0 3.99e-01 76.3% 81.7%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.95e-01 88.6% 87.3%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.53 42.0 3.14e-01 86.0% 89.5%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.53 35.0 3.29e-01 93.0% 55.7%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 42.0 2.64e-01 100.0% 18.5%
3edpA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 46.0 4.26e-01 98.2% 92.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 45.0 3.51e-01 99.1% 67.0%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.51 43.0 4.32e-01 92.1% 97.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3797033 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 47.0 4.24e-01 86.8% 51.0%
3385986 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.69 42.0 3.44e-01 100.0% 34.8%
2466103 265.1.1.2 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.69 44.0 4.15e-01 100.0% 55.7%
4274955 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 51.0 3.81e-01 100.0% 49.6%
4392904 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 50.0 3.78e-01 100.0% 69.6%
4125417 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.55 49.0 3.70e-01 99.1% 69.8%
4013024 5.1.4.249 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.55 42.0 2.82e-01 85.1% 20.9%
4188370 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.54 48.0 3.70e-01 100.0% 89.8%
3717095 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.54 49.0 2.99e-01 100.0% 24.7%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.54 34.0 3.22e-01 100.0% 50.3%
4316618 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 47.0 3.43e-01 100.0% 46.8%
3281893 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.53 39.0 3.28e-01 76.3% 64.3%
5076441 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.52 47.0 3.62e-01 100.0% 70.0%
3282535 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.51 45.0 3.50e-01 99.1% 67.3%
3980621 5084.5.1.8 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.50 38.0 3.12e-01 85.1% 42.8%