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putative_CDC123-like_protein
Euk-VirAcanthamoeba_polyphaga_mimivirus
putative_CDC123-like_protein__YP_003987419__Acanthamoeba_polyphaga_mimivirus__212035
Identity
- Accession:
- YP_003987419 ↗
- Protein ID:
- putative_CDC123-like_protein
- Kingdom:
- euk
Quality
77.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Mimivirus›
Acanthamoeba_polyphaga_mimivirus
TaxID: 212035
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-74
D2
high
residues 96-198
Domain cluster:
rep: IMGVR_UViG_3300028624_000218-3300028624-Ga0302246_100833612__D31-127
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2olsA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.63 | 56.0 | 4.66e-01 | 100.0% | 78.7% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.60 | 54.0 | 5.34e-01 | 100.0% | 96.3% |
| 2lvvA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 44.0 | 3.47e-01 | 82.5% | 46.8% |
| 4mi7A00 | 3.90.70.170 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 46.0 | 4.32e-01 | 100.0% | 84.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3209497 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.83 | 77.0 | 5.25e-01 | 100.0% | 41.2% |
| 1806544 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.82 | 77.0 | 5.50e-01 | 100.0% | 43.8% |
| 3542430 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.80 | 75.0 | 5.22e-01 | 100.0% | 38.0% |
| 3830939 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.80 | 75.0 | 5.28e-01 | 100.0% | 41.3% |
| 4373903 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.80 | 75.0 | 5.20e-01 | 100.0% | 39.5% |
| 4030088 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.78 | 73.0 | 5.25e-01 | 100.0% | 40.5% |
| 3636109 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.76 | 70.0 | 4.92e-01 | 100.0% | 39.7% |
| 5031204 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.66 | 49.0 | 3.70e-01 | 100.0% | 32.9% |
| 4947681 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.66 | 48.0 | 3.64e-01 | 100.0% | 32.4% |
| 4975654 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.65 | 48.0 | 3.68e-01 | 100.0% | 33.9% |
| 4947846 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.65 | 48.0 | 3.67e-01 | 100.0% | 34.3% |
| 4420915 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 55.0 | 5.24e-01 | 100.0% | 84.2% |
| 2799732 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 55.0 | 5.13e-01 | 100.0% | 83.3% |
| 4979281 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.59 | 44.0 | 3.39e-01 | 100.0% | 34.5% |
| 4020546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.59 | 52.0 | 4.87e-01 | 99.0% | 83.1% |
| 3611980 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.58 | 52.0 | 4.69e-01 | 100.0% | 79.3% |
| 3591566 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.54 | 34.0 | 3.45e-01 | 100.0% | 64.0% |
D3
high
residues 202-314
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00276__D68-84_169-266
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07065.20 best | D123 | 45.4 | 8.40e-12 | 98.2% | 30.0% |