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putative_D5_family_NTPase_ATPase

Euk-Vir

Frog_virus_3

putative_D5_family_NTPase_ATPase__YP_031600__Frog_virus_3__10493

Identity

Accession:
YP_031600 ↗
Protein ID:
putative_D5_family_NTPase_ATPase
Kingdom:
euk

Quality

73.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D2 medium residues 11-68_239-255
PDB
D3 medium residues 69-238_270-280
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23162.2 best AEP_C962R 72.7 6.30e-20 77.9% 75.7%
D4 medium residues 294-385
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08707.17 best PriCT_2 80.2 1.70e-22 83.7% 98.7%
D5 medium residues 386-477_501-547
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08706.17 best D5_N 48.7 1.50e-12 82.0% 55.8%
D6 medium residues 548-627_650-722_808-898
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08706.17 best D5_N 40.4 5.10e-10 35.7% 29.2%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u0jA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 4.50e-01 93.4% 99.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035042 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.73 69.0 6.63e-01 98.4% 100.0%
3954608 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.72 69.0 6.71e-01 97.5% 100.0%
4973289 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 68.0 6.55e-01 97.1% 100.0%
5022020 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.69 65.0 6.29e-01 96.3% 100.0%
5081314 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 65.0 6.40e-01 97.5% 99.6%
5029777 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.68 63.0 6.24e-01 95.9% 100.0%
3945876 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.68 64.0 6.26e-01 99.2% 100.0%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.65 62.0 5.85e-01 97.1% 89.6%
4443044 2004.1.1.1014 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 0.51 45.0 4.14e-01 93.0% 100.0%
D7 medium residues 723-807
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bjvA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 49.0 4.07e-01 100.0% 50.3%
4zpxA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 3.78e-01 100.0% 40.3%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 50.0 3.51e-01 100.0% 28.7%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.00e-01 100.0% 51.3%
2xveA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 35.0 3.33e-01 100.0% 50.0%
1g8pA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 50.0 3.91e-01 100.0% 66.3%
4akgA12 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 4.17e-01 100.0% 64.1%
3ja8204 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 48.0 3.29e-01 100.0% 26.2%
2fy6A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 40.0 3.38e-01 100.0% 48.3%
4ae2C01 3.30.750.130 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.51 29.0 3.53e-01 75.3% 100.0%
5ntfA01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.51 44.0 3.54e-01 100.0% 80.1%
1k7cA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.50 43.0 3.22e-01 100.0% 63.1%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973289 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.92 85.0 5.75e-01 100.0% 30.9%
3954608 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.89 77.0 5.28e-01 100.0% 30.0%
4959586 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.87 77.0 5.17e-01 100.0% 28.3%
5035042 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 72.0 4.89e-01 100.0% 27.3%
5029777 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.86 71.0 4.90e-01 100.0% 29.0%
5081314 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 69.0 4.78e-01 100.0% 28.1%
5011495 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 70.0 5.21e-01 100.0% 37.5%
5022020 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.85 71.0 4.89e-01 100.0% 28.7%
3253892 2004.1.1.409 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.78 62.0 4.69e-01 100.0% 36.9%
4033843 2004.1.1.313 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › VapE-like_dom 0.70 55.0 4.24e-01 100.0% 37.4%
4931926 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 58.0 3.91e-01 100.0% 25.1%
4812297 2004.1.1.55 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.68 53.0 4.07e-01 100.0% 37.0%
4948622 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.67 46.0 3.40e-01 100.0% 26.5%
4542391 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 50.0 3.56e-01 100.0% 28.8%
5058121 2004.1.1.1224 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF31144 0.62 54.0 3.69e-01 100.0% 27.3%
5023501 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.62 55.0 3.93e-01 100.0% 33.8%
5034518 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.60 51.0 3.83e-01 100.0% 37.7%
3963614 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.59 50.0 3.60e-01 100.0% 30.0%
5022725 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 3.58e-01 100.0% 29.3%
3281544 2004.1.1.584 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat, Mg_chelatase 0.59 51.0 3.71e-01 100.0% 33.5%
4134156 2004.1.1.125 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N 0.59 50.0 4.12e-01 100.0% 50.6%
None 0.59 50.0 4.04e-01 100.0% 47.6%
None 0.59 50.0 4.11e-01 100.0% 50.6%
None 0.59 50.0 4.02e-01 100.0% 47.6%
None 0.59 50.0 4.02e-01 100.0% 47.6%
None 0.58 51.0 3.23e-01 100.0% 20.4%
None 0.58 50.0 3.28e-01 100.0% 22.0%
3255516 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.58 50.0 3.55e-01 100.0% 32.6%
3677397 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.16e-01 100.0% 17.9%
None 0.58 50.0 3.60e-01 100.0% 33.3%
3811172 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.58 51.0 3.54e-01 100.0% 31.7%
3382056 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.22e-01 100.0% 20.4%
4017535 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.58 50.0 3.47e-01 100.0% 28.6%
3465917 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.18e-01 100.0% 18.8%
3726047 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.58 50.0 3.79e-01 100.0% 89.1%
None 0.58 50.0 3.56e-01 100.0% 38.9%
3681670 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.58 50.0 3.46e-01 100.0% 28.3%
3476274 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.58 50.0 3.57e-01 100.0% 33.8%
None 0.58 50.0 3.16e-01 100.0% 18.6%
3197159 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 50.0 3.24e-01 100.0% 21.2%
None 0.58 50.0 3.35e-01 100.0% 25.0%
4552869 2004.1.1.2 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 50.0 3.77e-01 100.0% 51.8%
4013468 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 50.0 3.56e-01 100.0% 33.8%
4078827 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.57 50.0 3.49e-01 100.0% 30.0%
3698933 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 50.0 3.53e-01 100.0% 32.9%
None 0.57 48.0 3.85e-01 100.0% 45.0%
5003899 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 50.0 3.53e-01 100.0% 32.9%
3594046 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 50.0 3.61e-01 100.0% 34.6%
None 0.57 50.0 3.35e-01 100.0% 25.7%
3495061 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.57 49.0 3.55e-01 100.0% 34.8%
4958444 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.57 49.0 3.84e-01 100.0% 53.0%
3594982 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 49.0 3.56e-01 100.0% 35.0%
3519657 7570.1.1.1 a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.57 41.0 3.61e-01 100.0% 50.0%
3550992 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.57 49.0 3.55e-01 100.0% 35.1%
3695173 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 49.0 3.44e-01 100.0% 30.0%
4940787 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 50.0 3.61e-01 100.0% 34.0%
3377628 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.57 50.0 3.89e-01 100.0% 46.8%
4888756 148.1.3.13 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_9 0.57 50.0 3.86e-01 100.0% 44.0%
3481498 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.57 49.0 3.48e-01 100.0% 30.9%
3700673 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 50.0 4.01e-01 100.0% 55.9%
5016962 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.56 49.0 3.59e-01 100.0% 36.8%
None 0.56 49.0 3.22e-01 100.0% 24.2%
3294524 2492.1.1.6 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › A_deamin 0.56 49.0 3.20e-01 98.8% 34.9%
3611910 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.56 49.0 3.47e-01 100.0% 32.0%
5025359 2004.1.1.46 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM 0.56 48.0 3.46e-01 100.0% 34.2%
4030223 2004.1.1.418 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, Mg_chelatase 0.56 49.0 3.49e-01 100.0% 33.3%
3703312 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 49.0 3.19e-01 100.0% 22.3%
4934143 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 3.45e-01 100.0% 32.3%
3952423 2004.1.1.339 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF3631 0.55 48.0 3.46e-01 100.0% 32.1%
4974815 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 47.0 3.71e-01 100.0% 48.2%
None 0.54 41.0 3.41e-01 100.0% 43.0%
5051757 2004.1.1.176 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Beta-Casp 0.54 46.0 3.71e-01 100.0% 86.7%
3707514 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.51 44.0 3.23e-01 100.0% 32.8%