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putative_DNAint_rec

Euk-Vir

Esparto_virus

putative_DNAint_rec__YP_009551728__Esparto_virus__2072209

Identity

Accession:
YP_009551728 ↗
Protein ID:
putative_DNAint_rec
Kingdom:
euk

Quality

67.2 mean pLDDT

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 192-323
PDB
Domain cluster: rep: dnaint_rec__YP_002321386__Oryctes_rhinoceros_nudivirus__92521__D156-273
D2 medium residues 61-122
PDB
Domain cluster: rep: dnaint_rec__YP_002321386__Oryctes_rhinoceros_nudivirus__92521__D77-146
D3 medium residues 324-387
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.85 58.0 4.10e-01 82.8% 26.0%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.84 56.0 3.79e-01 81.2% 20.9%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 54.0 3.87e-01 70.3% 26.5%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.78 55.0 4.77e-01 73.4% 53.2%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.57e-01 70.3% 97.8%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.79e-01 78.1% 68.4%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.94e-01 78.1% 82.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 44.0 3.86e-01 70.3% 62.6%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.54e-01 79.7% 93.3%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.19e-01 81.2% 70.7%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 43.0 4.43e-01 79.7% 93.4%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 35.0 3.54e-01 75.0% 83.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4659087 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 57.0 6.12e-01 75.0% 80.0%
3924589 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 58.0 6.51e-01 70.3% 90.0%
4150040 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 58.0 6.77e-01 79.7% 100.0%
3248148 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.85 58.0 6.76e-01 71.9% 100.0%
3956306 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 68.0 7.30e-01 92.2% 98.2%
4938260 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 58.0 5.97e-01 76.6% 76.7%
3989290 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 62.0 6.92e-01 82.8% 100.0%
4332912 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.83 53.0 5.98e-01 70.3% 84.0%
4181053 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 4.01e-01 81.2% 23.5%
4608916 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 6.27e-01 81.2% 85.5%
5083506 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 62.0 4.36e-01 85.9% 27.6%
3385608 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 61.0 6.31e-01 87.5% 83.3%
3281912 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 55.0 5.94e-01 79.7% 81.8%
3943131 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 56.0 5.83e-01 76.6% 76.7%
3969534 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 56.0 6.05e-01 76.6% 83.6%
3945143 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 55.0 5.92e-01 78.1% 81.8%
4173465 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 55.0 5.92e-01 81.2% 83.6%
4959580 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 51.0 5.76e-01 78.1% 84.0%
4981564 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 60.0 6.44e-01 81.2% 90.9%
5080070 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 55.0 5.89e-01 81.2% 83.6%
3981012 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 56.0 5.67e-01 75.0% 73.8%
4194508 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 58.0 6.25e-01 85.9% 90.9%
4961949 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 55.0 5.92e-01 84.4% 85.5%
4071647 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 55.0 5.94e-01 81.2% 85.5%
3589967 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 50.0 5.02e-01 75.0% 64.6%
4966033 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 58.0 6.12e-01 85.9% 86.2%
5038587 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.78 53.0 5.45e-01 70.3% 76.7%
4558962 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 61.0 6.46e-01 90.6% 100.0%
4959044 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 5.86e-01 81.2% 85.5%
1267973 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 64.0 6.22e-01 92.2% 83.3%
2417767 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 5.74e-01 87.5% 81.4%
3589854 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 57.0 5.68e-01 81.2% 76.9%
3837930 101.1.1.347 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_integrase 0.76 60.0 6.47e-01 90.6% 96.4%
3515936 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.76 51.0 5.32e-01 71.9% 75.0%
3602804 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 56.0 6.21e-01 81.2% 100.0%
4071215 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 61.0 6.52e-01 92.2% 100.0%
3586880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 57.0 6.08e-01 81.2% 92.7%
3558516 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.75 51.0 5.48e-01 71.9% 87.3%
3280314 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 58.0 6.19e-01 87.5% 96.4%
4281782 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 59.0 5.59e-01 87.5% 72.0%
4034069 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 55.0 5.95e-01 85.9% 92.7%
3957642 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 57.0 6.14e-01 87.5% 98.2%
4680413 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 60.0 5.97e-01 89.1% 90.8%
4044443 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 6.18e-01 90.6% 98.2%
3590293 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 57.0 6.04e-01 92.2% 100.0%
4400327 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 61.0 5.39e-01 92.2% 67.8%
4441096 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 56.0 5.75e-01 87.5% 91.7%
4119313 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 48.0 5.08e-01 75.0% 83.6%
3290335 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 59.0 5.87e-01 92.2% 100.0%
4153644 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 45.0 4.61e-01 70.3% 83.3%
4882575 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.67 47.0 4.61e-01 75.0% 82.9%
4968085 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.61e-01 75.0% 78.5%
5012142 101.1.2.205 ↗ alpha arrays › HTH › HTH › winged helix domain › PF0610-like_N 0.65 46.0 4.78e-01 76.6% 91.7%
4994432 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 3.97e-01 76.6% 46.7%
4618625 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 52.0 4.36e-01 87.5% 57.1%
3979083 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 43.0 4.48e-01 71.9% 84.7%
4940513 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.63 48.0 4.33e-01 84.4% 77.8%
1762220 101.1.1.58 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.63 42.0 4.38e-01 70.3% 86.2%
4928591 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.65e-01 81.2% 81.5%
4968863 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 4.63e-01 82.8% 96.9%
4987454 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.60 43.0 3.90e-01 76.6% 73.3%
4941846 101.1.2.55 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 46.0 4.39e-01 84.4% 92.0%
3893828 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.58 46.0 4.03e-01 92.2% 61.0%