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putative_E1_protein
Euk-VirGB_virus-D
putative_E1_protein__YP_009256194_putative_E1_protein__GB_virus-D__2847088
Identity
- Accession:
- YP_009256194_putative_E1_protein ↗
- Protein ID:
- putative_E1_protein
- Kingdom:
- euk
Quality
69.1
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Pegivirus›
GB_virus-D
TaxID: 2847088
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-63_115-139
D2
medium
residues 64-114_140-187
Domain cluster:
rep: putative_E1_peptide__YP_009227304__Human_pegivirus_2__1729141__D70-111_131-189
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12786.13 best | GBV-C_env | 23.3 | 3.30e-05 | 51.5% | 11.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 35.0 | 3.03e-01 | 100.0% | 41.9% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 32.0 | 3.15e-01 | 87.9% | 55.2% |
| 1h99A02 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.53 | 36.0 | 3.61e-01 | 96.0% | 66.0% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 44.0 | 4.19e-01 | 92.9% | 95.7% |
| 3qsgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 43.0 | 4.13e-01 | 92.9% | 93.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3668296 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.52 | 41.0 | 3.71e-01 | 85.9% | 89.6% |
| 3686432 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 3.23e-01 | 84.8% | 87.2% |