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putative_E6_oncogenic_protein

Euk-Vir

Rhinolophus_ferrumequinum_papillomavirus_1

putative_E6_oncogenic_protein__YP_009507324__Rhinolophus_ferrumequinum_papillomavirus_1__1464074

Identity

Accession:: YP_009507324 ↗
Protein ID:: putative_E6_oncogenic_protein
Kingdom:: euk

Quality

94.5 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Treisdeltapapillomavirus› Rhinolophus_ferrumequinum_papillomavirus_1

TaxID: 1464074

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-64

PDB

Domain cluster: rep: putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507__D7-59

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	34.4	3.70e-08	69.0%	35.4%

D2 high residues 67-136

PDB

Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00518.23 best	E6	36.3	9.10e-09	97.1%	60.9%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m3lA00	3.30.240.40	Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein	0.86	73.0	7.11e-01	91.4%	86.8%
2ljxA00	3.30.240.40	Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein	0.71	62.0	5.94e-01	97.1%	82.9%
2d5cA01	3.40.50.10860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1	0.55	35.0	3.01e-01	82.9%	40.7%
2darA01	2.10.110.10	Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein	0.51	39.0	3.94e-01	84.3%	97.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4802727	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.94	87.0	8.74e-01	97.1%	97.1%
1734555	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.90	84.0	7.91e-01	100.0%	86.4%
185478	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.83	70.0	7.28e-01	94.3%	98.5%
3036062	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.75	65.0	6.33e-01	94.3%	86.8%
4802726	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.74	59.0	6.15e-01	87.1%	95.3%
185477	4255.1.1.1 ↗	few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6	0.70	54.0	5.51e-01	100.0%	85.1%
4990133	377.1.1.0 ↗	few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like	0.61	38.0	4.19e-01	81.4%	80.0%
3486059	386.1.1.20 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met	0.58	32.0	3.75e-01	80.0%	90.0%
3441542	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.56	47.0	3.95e-01	95.7%	88.8%
3419133	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.56	46.0	3.97e-01	94.3%	88.7%
3418697	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.55	43.0	3.91e-01	87.1%	99.0%
3806927	1.1.11.1 ↗	beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3	0.52	39.0	3.61e-01	82.9%	100.0%