←Back to structures

putative_E6_protein

Euk-Vir

Felis_catus_papillomavirus_4

putative_E6_protein__YP_008574810__Felis_catus_papillomavirus_4__1398507

Identity

Accession:
YP_008574810 ↗
Protein ID:
putative_E6_protein
Kingdom:
euk

Quality

95.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Taupapillomavirus› Felis_catus_papillomavirus_4

TaxID: 1398507

Cluster

View cluster (138 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-59
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3lA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.85 78.0 6.83e-01 100.0% 71.1%
2ljxA00 3.30.240.40 Alpha Beta › 2-Layer Sandwich › CRO Repressor › E6 early regulatory protein 0.80 70.0 6.10e-01 100.0% 64.6%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 40.0 2.66e-01 71.7% 36.4%
3hhdA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 43.0 2.58e-01 81.1% 67.1%
5hkxA04 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 34.0 3.62e-01 75.5% 65.9%
4bbqA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 44.0 4.12e-01 92.5% 65.7%
1ac5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.54e-01 84.9% 15.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.58e-01 90.6% 90.9%
3hcsA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 33.0 3.40e-01 88.7% 61.5%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.16e-01 75.5% 51.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.24e-01 90.6% 85.0%
7r7cr01 2.40.10.310 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 36.0 3.33e-01 73.6% 100.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.15e-01 92.5% 72.9%
1kgqA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.52 42.0 3.10e-01 98.1% 42.4%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.52 36.0 3.55e-01 75.5% 68.3%
1wdvA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.52 39.0 2.91e-01 84.9% 97.3%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.10e-01 92.5% 82.0%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.07e-01 88.7% 83.2%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.31e-01 94.3% 89.3%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.25e-01 94.3% 85.4%
3vhtB02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 28.0 3.20e-01 92.5% 70.6%
2qh5B00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 41.0 2.67e-01 92.5% 40.2%
2juoA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.67e-01 100.0% 80.9%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 2.98e-01 90.6% 77.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4802726 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 84.0 7.81e-01 100.0% 82.8%
1734555 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.91 83.0 7.13e-01 100.0% 65.4%
4802727 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.87 79.0 7.15e-01 100.0% 75.7%
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.86 62.0 5.75e-01 100.0% 61.2%
185478 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.84 75.0 6.99e-01 100.0% 84.6%
3036062 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.79 69.0 6.17e-01 100.0% 69.7%
3164830 377.1.1.7 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-dskA_traR 0.63 41.0 4.51e-01 92.5% 87.5%
3486059 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.63 39.0 4.17e-01 98.1% 80.0%
3469416 101.19.1.1 ↗ alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C 0.60 47.0 3.81e-01 92.5% 43.8%
3895419 221.4.1.24 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 0.58 40.0 2.58e-01 75.5% 35.5%
3882708 386.1.1.48 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_C2HC_14 0.55 31.0 3.47e-01 81.1% 74.3%
3217621 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.55 39.0 3.61e-01 75.5% 72.9%
3960172 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 44.0 3.51e-01 96.2% 93.2%
3970236 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 39.0 3.07e-01 86.8% 80.6%
3957839 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 39.0 3.17e-01 90.6% 79.2%
3213524 243.1.1.82 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.52 42.0 3.19e-01 98.1% 70.3%
4936952 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.52 42.0 3.76e-01 94.3% 100.0%
3275237 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.52 38.0 3.73e-01 83.0% 73.3%
376518 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.52 39.0 3.15e-01 92.5% 72.9%
3601626 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 41.0 3.18e-01 96.2% 80.7%
1108144 3070.1.1.7 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › FecR_C 0.51 38.0 3.37e-01 83.0% 85.7%
3539459 386.1.1.3 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF 0.51 31.0 3.21e-01 86.8% 62.0%
3226144 243.1.1.82 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26529 0.51 40.0 3.03e-01 96.2% 66.7%
D2 high residues 66-134
PDB
Domain cluster: rep: E6__YP_009177725__Trichechus_manatus_latirostris_papillomavirus_4__2848317__D98-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00518.23 best E6 44.1 3.60e-11 98.6% 53.6%