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putative_F-box_containing_protein

Euk-Vir

Melbournevirus

putative_F-box_containing_protein__YP_009094519__Melbournevirus__1560514

Identity

Accession:
YP_009094519 ↗
Protein ID:
putative_F-box_containing_protein
Kingdom:
euk

Quality

73.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Marseilleviridae› Marseillevirus› Marseillevirus_sp._'Melbournevirus'

TaxID: 1560514

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62
PDB
Domain cluster: rep: hypothetical_protein_D1R32_gp483__YP_009507245__Tunisvirus_fontaine2__1421067__D4-62
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 31.2 2.10e-07 79.0% 78.7%
PF00646.39 F-box 28.5 1.50e-06 69.3% 83.7%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.80 64.0 5.39e-01 85.5% 90.0%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.77 62.0 5.46e-01 85.5% 75.9%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.76 58.0 4.96e-01 82.3% 96.0%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.70 62.0 4.09e-01 100.0% 58.3%
3l2oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.66 56.0 4.96e-01 91.9% 67.0%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 42.0 4.20e-01 71.0% 100.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 50.0 3.66e-01 90.3% 54.8%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.60 46.0 3.34e-01 87.1% 36.3%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.56 43.0 3.71e-01 90.3% 88.3%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.52 38.0 3.37e-01 83.9% 64.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924100 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.92 63.0 7.39e-01 71.0% 100.0%
3994849 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.89 62.0 7.13e-01 74.2% 100.0%
3203146 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.88 67.0 5.35e-01 80.6% 94.8%
3686440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 62.0 5.63e-01 75.8% 66.3%
3494629 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.85 62.0 6.79e-01 75.8% 100.0%
3636536 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 64.0 4.89e-01 80.6% 65.9%
3420574 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 57.0 6.47e-01 71.0% 97.8%
3328883 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 61.0 5.57e-01 77.4% 100.0%
3726245 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 58.0 6.39e-01 74.2% 92.0%
3221036 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 55.0 6.28e-01 71.0% 95.6%
3303934 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 53.0 6.04e-01 72.6% 91.1%
4015900 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 56.0 6.19e-01 72.6% 96.0%
3727871 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 63.0 5.53e-01 80.6% 97.6%
3650406 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 56.0 6.17e-01 72.6% 94.0%
3743084 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 64.0 5.57e-01 83.9% 98.9%
4073598 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 57.0 5.65e-01 74.2% 80.0%
3708786 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.80 65.0 5.49e-01 87.1% 86.0%
2774506 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 60.0 6.21e-01 83.9% 84.7%
3209791 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 56.0 5.56e-01 74.2% 76.9%
3529395 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 55.0 5.43e-01 72.6% 72.3%
3239855 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.79 54.0 6.08e-01 74.2% 97.8%
3235397 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 57.0 5.84e-01 77.4% 83.3%
3408565 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 53.0 5.95e-01 71.0% 100.0%
3454872 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 54.0 5.83e-01 72.6% 96.0%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 49.0 5.74e-01 71.0% 100.0%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 62.0 5.50e-01 85.5% 95.3%
3194542 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 68.0 3.97e-01 100.0% 25.0%
3730054 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 53.0 5.10e-01 72.6% 68.6%
4022808 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 68.0 4.51e-01 100.0% 51.5%
3887744 109.4.1.1206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › F-box-like 0.75 67.0 4.40e-01 100.0% 51.5%
3229045 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 59.0 5.03e-01 83.9% 71.6%
None — 0.75 67.0 4.30e-01 100.0% 45.9%
3223791 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 53.0 5.44e-01 75.8% 86.7%
4593317 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 53.0 5.44e-01 75.8% 86.7%
3466008 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.74 66.0 3.93e-01 98.4% 30.3%
3711287 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 57.0 4.82e-01 83.9% 69.2%
4023099 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 65.0 5.26e-01 96.8% 95.7%
3465884 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 56.0 5.61e-01 83.9% 78.1%
3417160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 61.0 5.23e-01 88.7% 62.1%
3792735 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 63.0 3.82e-01 93.5% 100.0%
3301272 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 61.0 5.01e-01 90.3% 90.9%
3490408 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 60.0 4.73e-01 87.1% 96.7%
3726578 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 59.0 5.25e-01 85.5% 90.6%
3785669 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.74 56.0 5.30e-01 85.5% 68.0%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 50.0 4.82e-01 72.6% 62.9%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 58.0 5.59e-01 85.5% 85.7%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 59.0 5.62e-01 87.1% 98.6%
3628163 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 55.0 5.42e-01 80.6% 100.0%
3354238 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 51.0 5.38e-01 77.4% 83.6%
3806575 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 51.0 5.39e-01 75.8% 94.5%
3194125 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 61.0 5.58e-01 91.9% 97.5%
3901480 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 58.0 5.29e-01 87.1% 91.3%
3613821 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 56.0 5.39e-01 85.5% 98.6%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 66.0 4.08e-01 100.0% 39.4%
3731690 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 59.0 5.37e-01 88.7% 78.8%
3636704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 58.0 4.68e-01 88.7% 97.4%
3726840 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.71 57.0 5.35e-01 87.1% 93.3%
3648014 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 57.0 5.36e-01 87.1% 97.3%
3224579 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 63.0 3.98e-01 100.0% 61.1%
3184741 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 57.0 4.69e-01 88.7% 98.2%
3536855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.69 58.0 4.99e-01 91.9% 97.9%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 54.0 5.35e-01 85.5% 98.5%
3407033 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 58.0 5.46e-01 93.5% 100.0%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 47.0 4.94e-01 72.6% 83.6%
3685160 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.68 62.0 5.48e-01 98.4% 100.0%
3680688 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.68 59.0 3.56e-01 100.0% 24.9%
3236774 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 60.0 3.78e-01 100.0% 89.2%
3174603 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.66 49.0 5.00e-01 83.9% 81.7%
3920713 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.66 57.0 3.50e-01 100.0% 31.6%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.64 52.0 4.71e-01 90.3% 71.8%
3233582 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 56.0 3.54e-01 96.8% 85.4%
3527636 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.64 47.0 4.26e-01 82.3% 98.9%
3311874 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.63 54.0 5.05e-01 96.8% 77.3%
D2 medium residues 63-215
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lshB00 2.20.90.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain 0.60 48.0 4.60e-01 83.0% 92.5%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.55 49.0 4.17e-01 94.1% 81.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 40.0 3.73e-01 77.8% 62.1%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 41.0 3.53e-01 78.4% 92.9%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.52 45.0 4.35e-01 92.8% 82.9%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 37.0 3.50e-01 71.2% 89.8%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 3.12e-01 85.0% 61.2%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 4.03e-01 83.7% 90.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3539857 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.70 65.0 5.72e-01 100.0% 73.5%
3772693 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.69 64.0 5.75e-01 100.0% 74.3%
3601199 77.2.1.0 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N 0.69 52.0 5.79e-01 81.7% 100.0%
3608202 77.3.1.3 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.67 52.0 5.75e-01 86.3% 100.0%
3712149 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.66 60.0 5.31e-01 98.7% 67.7%
4387407 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.64 58.0 3.41e-01 95.4% 16.6%
3574877 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.63 57.0 4.50e-01 98.0% 58.4%
4098598 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.62 55.0 3.76e-01 97.4% 48.6%
3706756 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.61 56.0 4.61e-01 100.0% 76.7%
3615659 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 43.0 3.98e-01 74.5% 80.0%
3625919 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.58 41.0 3.92e-01 72.5% 71.7%
3829563 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.58 41.0 4.03e-01 83.7% 66.1%
3705162 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.56 52.0 4.11e-01 100.0% 62.0%
3501545 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.55 43.0 4.16e-01 81.7% 92.4%
1548777 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.55 41.0 3.53e-01 78.4% 92.9%
3804658 4018.1.1.2 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.54 40.0 3.59e-01 77.8% 82.7%
3647716 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.54 40.0 4.01e-01 77.1% 90.6%
3701349 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.38e-01 95.4% 80.5%
3065351 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.51 36.0 3.92e-01 77.8% 86.7%
4527793 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.50 40.0 3.99e-01 83.7% 91.1%