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putative_GM-CSF

Euk-Vir

Parapoxvirus_red_deer_HL953

putative_GM-CSF__YP_009112858__Parapoxvirus_red_deer_HL953__1579460

Identity

Accession:
YP_009112858 ↗
Protein ID:
putative_GM-CSF
Kingdom:
euk

Quality

65.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Parapoxvirus› Parapoxvirus_red_deer/HL953

TaxID: 1579460

Cluster

View cluster (92 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-178_193-228_260-267
PDB
Domain cluster: rep: NFkB_inhibitor__YP_009408124__Eptesipox_virus__1329402__D30-162_189-224
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02250.21 best Orthopox_35kD 68.1 1.20e-18 99.5% 76.1%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.70 67.0 6.19e-01 100.0% 95.1%
3kl0D01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 24.0 3.17e-01 79.8% 58.5%
5brqA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 21.0 3.08e-01 78.1% 67.9%
4hkjD00 2.60.240.30 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › 0.59 54.0 5.42e-01 100.0% 95.2%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 31.0 3.90e-01 90.2% 85.2%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.58 34.0 3.68e-01 91.8% 66.7%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 31.0 3.75e-01 95.6% 79.5%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.56 31.0 4.11e-01 84.2% 99.0%
3a21A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 21.0 2.89e-01 79.2% 65.9%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 28.0 3.33e-01 82.5% 76.5%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 25.0 3.45e-01 90.2% 91.1%
6f90A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 36.0 3.18e-01 82.0% 48.3%
7uwjC01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.50 26.0 3.08e-01 90.2% 70.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2073369 527.1.1.1 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Orthopox_35kD 0.89 83.0 7.85e-01 95.6% 89.6%
3547494 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 38.0 4.56e-01 78.1% 84.2%
3252383 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.61 39.0 3.59e-01 98.4% 48.9%
3468140 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.61 26.0 3.58e-01 82.5% 77.8%
3921201 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 29.0 3.84e-01 90.7% 84.2%
221111 527.1.1.2 ↗ beta sandwiches › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI › Soluble secreted chemokine inhibitor, VCCI 0.59 54.0 5.42e-01 100.0% 95.2%
3367441 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 28.0 3.67e-01 84.7% 79.8%
3219781 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 27.0 3.47e-01 83.6% 72.4%
1870637 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 23.0 3.05e-01 80.3% 66.3%
3265841 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.56 28.0 3.73e-01 84.7% 87.0%
5055194 327.18.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.55 22.0 3.46e-01 73.2% 100.0%
3328663 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.53 25.0 3.52e-01 80.3% 98.8%
3348189 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.52 25.0 3.44e-01 79.2% 92.9%
3992567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 29.0 3.41e-01 86.3% 78.4%
3679255 304.55.1.15 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.51 32.0 3.75e-01 98.4% 88.5%
5043584 12.3.1.18 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.50 39.0 3.22e-01 81.4% 74.8%
3367922 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.50 27.0 3.65e-01 85.2% 100.0%