putative_HNH_endonuclease

Euk-Vir

Aureococcus_anophagefferens_virus

putative_HNH_endonuclease__YP_009052174__Aureococcus_anophagefferens_virus__1474867

Identity

73.0 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Schizomimiviridae› Kratosvirus› Aureococcus_anophagefferens_virus

TaxID: 1474867

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-119

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u3eM01	3.90.75.20	Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A ›	0.88	60.0	5.65e-01	71.9%	59.4%
2iteA00	2.60.40.1850	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	35.0	3.20e-01	71.9%	93.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4957888	4.1.1.458 ↗	beta barrels › SH3 › SH3 › SH3 › DUF2098	0.55	31.0	3.63e-01	70.8%	81.7%
5079099	101.8.1.4 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f	0.50	42.0	2.64e-01	94.4%	31.2%

D2 high residues 168-231

PDB

Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2m3aA00	1.10.10.1900	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like	0.56	39.0	3.87e-01	96.9%	70.1%
1e29A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.56	46.0	3.70e-01	95.3%	88.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3649733	109.4.1.202 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16	0.57	39.0	2.94e-01	73.4%	37.3%
3901205	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.56	37.0	3.18e-01	70.3%	74.8%
3743932	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	42.0	3.98e-01	87.5%	97.5%
5016973	181.1.1.0 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins	0.54	43.0	4.03e-01	92.2%	78.8%

D3 high residues 235-345

PDB

Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13392.13 best	HNH_3	35.1	1.10e-08	43.2%	97.8%