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putative_IMV_membrane_protein

Euk-Vir

Parapoxvirus_red_deer_HL953

putative_IMV_membrane_protein__YP_009112791__Parapoxvirus_red_deer_HL953__1579460

Identity

Accession:
YP_009112791 ↗
Protein ID:
putative_IMV_membrane_protein
Kingdom:
euk

Quality

58.2 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Parapoxvirus› Parapoxvirus_red_deer/HL953

TaxID: 1579460

Cluster

View cluster (28 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03338.22 best Pox_J1 75.8 4.50e-21 100.0% 37.9%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q20A01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.81 61.0 5.25e-01 92.9% 53.7%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.75 61.0 4.12e-01 92.9% 25.0%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 52.0 5.59e-01 83.9% 87.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.71 58.0 5.50e-01 87.5% 76.9%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.70 54.0 5.29e-01 91.1% 77.0%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.70 58.0 5.08e-01 92.9% 62.8%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 55.0 5.43e-01 85.7% 81.7%
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.68 54.0 5.29e-01 94.6% 80.3%
3hjlA01 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.64 46.0 4.15e-01 80.4% 97.6%
3ccyA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 54.0 4.00e-01 94.6% 55.1%
3tacB02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.63 48.0 4.29e-01 83.9% 76.2%
3himA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 53.0 3.67e-01 98.2% 43.2%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.55e-01 83.9% 52.2%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.42e-01 98.2% 65.7%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 42.0 4.37e-01 85.7% 90.4%
1rz4A01 1.25.40.250 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 0.53 41.0 3.30e-01 87.5% 64.2%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 39.0 3.80e-01 83.9% 84.6%
1svmA02 1.20.1050.70 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Large T antigen, SV40, domain 3 0.50 42.0 3.35e-01 96.4% 45.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4449838 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.84 61.0 4.93e-01 76.8% 43.0%
5050578 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.82 65.0 5.72e-01 92.9% 60.0%
3580280 604.1.1.192 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 0.81 61.0 5.04e-01 85.7% 47.4%
5049641 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.78 64.0 5.79e-01 94.6% 66.7%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.77 65.0 5.52e-01 96.4% 69.5%
5001284 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 67.0 4.85e-01 100.0% 36.9%
3329217 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.76 61.0 4.16e-01 98.2% 25.0%
3565022 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 57.0 5.36e-01 83.9% 75.7%
4965021 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.74 54.0 5.44e-01 89.3% 78.2%
3296414 192.29.1.168 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF641 0.74 57.0 5.33e-01 92.9% 67.1%
3254719 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.71 62.0 5.25e-01 100.0% 93.7%
3180974 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 45.0 4.60e-01 73.2% 80.0%
3724303 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 57.0 4.20e-01 98.2% 63.4%
2144238 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.54 44.0 3.89e-01 94.6% 93.1%
D2 medium residues 67-147
PDB