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putative_Kila-N_domain-containing_protein

Euk-Vir

Heterosigma_akashiwo_virus_01

putative_Kila-N_domain-containing_protein__YP_009507478__Heterosigma_akashiwo_virus_01__97195

Identity

Accession:: YP_009507478 ↗
Protein ID:: putative_Kila-N_domain-containing_protein
Kingdom:: euk

Quality

79.0 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Raphidovirus› Heterosigma_akashiwo_virus_01

TaxID: 97195

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-104

PDB

Domain cluster: rep: NC_048756.1__YP_009844666.1__HWC12_gp063__00063__D3-100

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04383.20 best	KilA-N	26.0	9.60e-06	96.3%	65.4%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1sbxA00	3.10.260.20	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski	0.65	58.0	5.34e-01	100.0%	81.1%
5vmzA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.63	26.0	3.61e-01	93.8%	76.9%
6fucA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.54	41.0	4.04e-01	96.3%	77.9%
1ul4A01	4.10.1100.10	Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain	0.53	25.0	2.81e-01	92.6%	53.8%
6ncrB01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	37.0	2.79e-01	79.0%	63.9%
3nybA02	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.51	36.0	3.33e-01	75.3%	85.5%
2i6tA02	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.50	37.0	3.13e-01	81.5%	79.6%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3171223	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.70	53.0	4.89e-01	100.0%	62.5%
3179613	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.69	52.0	5.07e-01	100.0%	72.2%
3197602	101.1.9.6 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N	0.67	52.0	4.45e-01	100.0%	52.3%
3331838	386.1.1.4 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED	0.64	30.0	3.69e-01	93.8%	70.0%
3785460	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.60	53.0	4.46e-01	100.0%	57.6%
3516620	101.1.9.107 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867	0.59	50.0	4.83e-01	98.8%	95.8%
3800806	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	32.0	3.41e-01	75.3%	68.6%
4998593	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.53	45.0	4.04e-01	100.0%	66.1%
3849208	386.1.1.133 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2+zf-C2H2_4	0.53	26.0	2.78e-01	81.5%	50.0%
3204103	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.51	30.0	3.38e-01	88.9%	76.7%
5001766	2003.1.5.66 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11	0.51	39.0	2.96e-01	86.4%	93.3%
3270686	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.50	34.0	3.47e-01	96.3%	71.2%

D2 high residues 113-218

PDB

Domain cluster: rep: LC545446.1__BCD83262.1__NrS5_21__00021__D29-130