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putative_L1_late_protein
Euk-VirEquus_caballus_papillomavirus_6
putative_L1_late_protein__YP_007518497__Equus_caballus_papillomavirus_6__1235427
Identity
- Accession:
- YP_007518497 ↗
- Protein ID:
- putative_L1_late_protein
- Kingdom:
- euk
Quality
81.2
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Dyorhopapillomavirus›
Equus_caballus_papillomavirus_6
TaxID: 1235427
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-108_314-331_357-404_441-469
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 127.6 | 9.30e-37 | 49.4% | 17.5% |
| PF00500.25 | Late_protein_L1 | 62.7 | 4.40e-17 | 28.3% | 9.7% |
| PF00500.25 | Late_protein_L1 | 27.2 | 2.40e-06 | 16.7% | 5.2% |
D2
medium
residues 109-166_233-313_332-356
Domain cluster:
rep: L1_gene_product__YP_006202695__Papio_hamadryas_papillomavirus_1__990303__D108-155_249-262_283-313_333-358
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 103.1 | 2.50e-29 | 65.2% | 17.5% |
| PF00500.25 | Late_protein_L1 | 56.0 | 4.50e-15 | 36.0% | 11.5% |
D3
medium
residues 167-232
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 89.0 | 4.60e-25 | 100.0% | 12.9% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.96 | 91.0 | 5.30e-01 | 100.0% | 14.5% |
| 3hg9A02 | 6.20.120.30 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › PilM protein, C-terminal domain | 0.51 | 25.0 | 2.97e-01 | 95.5% | 61.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2806413 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.96 | 90.0 | 5.17e-01 | 100.0% | 13.5% |
| 2707156 | 10.2.1.4 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1 | 0.96 | 92.0 | 5.29e-01 | 100.0% | 13.7% |