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putative_Lon_protease
Euk-VirCafeteria_roenbergensis_virus_BV-PW1
putative_Lon_protease__YP_003969869__Cafeteria_roenbergensis_virus_BV-PW1__693272
Identity
- Accession:
- YP_003969869 ↗
- Protein ID:
- putative_Lon_protease
- Kingdom:
- euk
Quality
66.8
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Rheavirus›
Cafeteria_roenbergensis_virus_BV-PW1
TaxID: 693272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 432-629
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 64.7 | 1.60e-17 | 71.7% | 93.9% |
| PF07728.21 | AAA_5 | 29.0 | 1.40e-06 | 70.2% | 94.2% |
D2
high
residues 644-723
Domain cluster:
rep: ATP-dependent_Lon_protease,_bacterial_type__YP_007354251__Acanthamoeba_polyphaga_moumouvirus__1269028__D651-727
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22667.3 best | Lon_lid | 33.7 | 3.20e-08 | 56.2% | 64.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qzmA00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.85 | 75.0 | 7.03e-01 | 100.0% | 79.8% |
| 7krzA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.84 | 73.0 | 7.16e-01 | 100.0% | 88.1% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 62.0 | 5.94e-01 | 100.0% | 84.9% |
| 1r6bX05 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 57.0 | 5.34e-01 | 96.2% | 83.8% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.66 | 46.0 | 3.92e-01 | 73.8% | 87.3% |
| 3gvpA01 | 3.40.50.1480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Adenosylhomocysteinase-like | 0.58 | 49.0 | 3.47e-01 | 95.0% | 72.4% |
| 3ehgA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 44.0 | 3.87e-01 | 100.0% | 95.2% |
| 4hh5A00 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.51 | 40.0 | 3.30e-01 | 91.3% | 76.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3811688 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.90 | 76.0 | 7.23e-01 | 100.0% | 78.9% |
| 2906440 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 65.0 | 6.77e-01 | 80.0% | 82.2% |
| 4813605 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.89 | 77.0 | 7.32e-01 | 100.0% | 79.6% |
| 3112458 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 77.0 | 7.23e-01 | 100.0% | 77.9% |
| 3249440 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.88 | 77.0 | 7.37e-01 | 100.0% | 82.2% |
| 4408820 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.87 | 82.0 | 7.12e-01 | 100.0% | 91.3% |
| 4128497 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.87 | 77.0 | 7.36e-01 | 100.0% | 83.3% |
| 4513308 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.87 | 76.0 | 7.31e-01 | 100.0% | 83.3% |
| 4504659 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.87 | 77.0 | 7.17e-01 | 100.0% | 78.9% |
| 4026993 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.87 | 75.0 | 7.39e-01 | 100.0% | 87.1% |
| 4168904 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.86 | 79.0 | 7.41e-01 | 100.0% | 82.1% |
| 4101608 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.86 | 74.0 | 7.13e-01 | 100.0% | 82.2% |
| 3572283 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.86 | 80.0 | 7.30e-01 | 100.0% | 79.0% |
| 2706717 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.84 | 73.0 | 6.82e-01 | 100.0% | 77.9% |
| 3237083 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.84 | 78.0 | 7.19e-01 | 100.0% | 86.0% |
| 3640249 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.84 | 78.0 | 6.82e-01 | 100.0% | 86.1% |
| 4303879 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.83 | 78.0 | 6.77e-01 | 100.0% | 84.3% |
| 4346871 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.82 | 76.0 | 6.35e-01 | 100.0% | 86.9% |
| 3653454 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.82 | 76.0 | 6.74e-01 | 100.0% | 85.5% |
| 3964162 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.81 | 75.0 | 6.82e-01 | 100.0% | 84.8% |
| 4538967 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.81 | 76.0 | 6.61e-01 | 100.0% | 83.5% |
| 4154381 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.71 | 62.0 | 6.01e-01 | 97.5% | 87.8% |
| 3369792 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.69 | 57.0 | 5.40e-01 | 93.8% | 76.8% |
| 3806710 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.67 | 54.0 | 5.39e-01 | 93.8% | 87.1% |
| 3435276 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.66 | 53.0 | 5.18e-01 | 93.8% | 80.0% |
| 4011290 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 53.0 | 5.25e-01 | 100.0% | 84.7% |
| 3350475 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.63 | 54.0 | 5.26e-01 | 97.5% | 90.0% |
| 3810079 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.63 | 52.0 | 5.13e-01 | 97.5% | 88.2% |
| 3970200 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 54.0 | 5.21e-01 | 100.0% | 87.8% |
| 3188710 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.63 | 54.0 | 4.93e-01 | 100.0% | 73.3% |
| 4943635 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.61 | 42.0 | 3.12e-01 | 71.2% | 47.3% |
| 4959838 | 2003.1.6.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like | 0.60 | 52.0 | 4.06e-01 | 100.0% | 94.7% |
| 4945404 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.60 | 40.0 | 3.12e-01 | 70.0% | 57.6% |
| 3514481 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 41.0 | 3.14e-01 | 71.2% | 40.5% |
| 3384187 | 2004.1.1.208 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 | 0.59 | 41.0 | 3.03e-01 | 71.2% | 50.5% |
| 4931546 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.57 | 38.0 | 2.96e-01 | 70.0% | 58.9% |
| 3607363 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.56 | 43.0 | 3.17e-01 | 85.0% | 93.2% |
| 5036774 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.56 | 38.0 | 2.92e-01 | 70.0% | 61.1% |
| None | — | 0.55 | 38.0 | 2.64e-01 | 73.8% | 38.7% | |
| 5018567 | 2007.9.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › SEFIR | 0.54 | 37.0 | 3.21e-01 | 73.8% | 47.5% |
| 3738531 | 2488.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_3 | 0.53 | 40.0 | 2.89e-01 | 78.8% | 89.1% |
| 5032101 | 2004.1.1.188 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 | 0.53 | 40.0 | 3.01e-01 | 81.2% | 50.0% |
D3
high
residues 739-932
Domain cluster:
rep: CAKLQF020000026.1__CAH1092387.1__SAMEA5780031_03519__00001__D3-168
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05362.20 best | Lon_C | 143.3 | 1.10e-41 | 100.0% | 84.4% |
D4
medium
residues 217-266
D5
medium
residues 267-372
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l9tA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.70 | 53.0 | 5.10e-01 | 79.2% | 75.4% |
| 3woyA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 50.0 | 3.85e-01 | 81.1% | 39.4% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.65 | 53.0 | 4.48e-01 | 88.7% | 61.7% |
| 1sqmA04 | 1.25.40.320 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain | 0.65 | 51.0 | 4.59e-01 | 84.9% | 71.8% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 54.0 | 4.30e-01 | 93.4% | 61.3% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.64 | 55.0 | 3.93e-01 | 95.3% | 53.4% |
| 4qhpA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.64 | 52.0 | 3.69e-01 | 87.7% | 48.0% |
| 3d3mA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 50.0 | 4.42e-01 | 86.8% | 76.4% |
| 1vdyA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 50.0 | 4.56e-01 | 87.7% | 85.0% |
| 2rg8A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 50.0 | 4.57e-01 | 94.3% | 99.3% |
| 4o6mA02 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.60 | 43.0 | 3.57e-01 | 74.5% | 75.9% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 48.0 | 4.18e-01 | 90.6% | 93.1% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.58 | 49.0 | 3.97e-01 | 92.5% | 85.6% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 40.0 | 4.01e-01 | 71.7% | 75.9% |
| 5cqgA05 | 1.10.357.90 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Telomerase reverse transcriptase (TERT), thumb domain | 0.57 | 48.0 | 4.03e-01 | 93.4% | 81.0% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.57 | 41.0 | 3.59e-01 | 75.5% | 92.0% |
| 2imiB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 48.0 | 4.45e-01 | 94.3% | 92.1% |
| 3bhqA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 46.0 | 3.85e-01 | 95.3% | 88.1% |
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.55 | 46.0 | 4.31e-01 | 95.3% | 75.5% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.55 | 39.0 | 3.97e-01 | 80.2% | 74.8% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.54 | 44.0 | 3.64e-01 | 88.7% | 83.4% |
| 3bjbD00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 42.0 | 3.64e-01 | 85.8% | 82.8% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 45.0 | 4.18e-01 | 92.5% | 93.2% |
| 2c42A06 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.52 | 42.0 | 2.92e-01 | 88.7% | 92.2% |
| 3kraC00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 36.0 | 2.81e-01 | 72.6% | 42.8% |
| 4hkaA01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 46.0 | 3.38e-01 | 100.0% | 88.1% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 36.0 | 3.30e-01 | 71.7% | 78.6% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.50 | 37.0 | 3.65e-01 | 84.0% | 70.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973020 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.74 | 50.0 | 3.95e-01 | 73.6% | 34.8% |
| 4927476 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 60.0 | 5.40e-01 | 91.5% | 81.4% |
| 3998266 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 54.0 | 4.85e-01 | 84.0% | 70.3% |
| 3706762 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 55.0 | 4.88e-01 | 86.8% | 71.3% |
| 3611982 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.66 | 51.0 | 4.67e-01 | 83.0% | 68.3% |
| 3844702 | 109.4.1.630 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind,CNOT1_HEAT | 0.66 | 54.0 | 3.81e-01 | 88.7% | 33.1% |
| 3785681 | 109.4.1.226 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind | 0.66 | 53.0 | 4.51e-01 | 87.7% | 63.4% |
| 3516017 | 109.4.1.630 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind,CNOT1_HEAT | 0.65 | 53.0 | 3.45e-01 | 86.8% | 32.6% |
| 998556 | 109.4.1.226 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind | 0.65 | 53.0 | 4.48e-01 | 88.7% | 61.7% |
| 4019412 | 109.4.1.1974 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Gcn1_N, GNC1_N | 0.65 | 52.0 | 3.58e-01 | 88.7% | 45.8% |
| 3513011 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 52.0 | 4.25e-01 | 88.7% | 57.1% |
| 3244085 | 109.54.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 | 0.64 | 52.0 | 4.54e-01 | 87.7% | 76.9% |
| 3782685 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.63 | 49.0 | 4.58e-01 | 84.0% | 76.3% |
| 3299258 | 109.4.1.31 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3 | 0.63 | 54.0 | 4.56e-01 | 95.3% | 83.9% |
| 3808806 | 109.4.1.575 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF577 | 0.63 | 55.0 | 3.47e-01 | 100.0% | 34.4% |
| 3576811 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 49.0 | 3.79e-01 | 85.8% | 35.7% |
| 3241699 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 52.0 | 4.70e-01 | 90.6% | 75.9% |
| 3496624 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.62 | 49.0 | 3.22e-01 | 87.7% | 22.2% |
| 4336655 | 109.3.1.165 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 | 0.62 | 51.0 | 3.42e-01 | 91.5% | 35.7% |
| 3595696 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.61 | 48.0 | 4.43e-01 | 84.9% | 91.9% |
| 4352755 | 109.4.1.630 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CNOT1_TTP_bind,CNOT1_HEAT | 0.59 | 52.0 | 3.24e-01 | 97.2% | 46.8% |
| 3748995 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 3.86e-01 | 89.6% | 74.0% |
| 3966285 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 52.0 | 4.88e-01 | 100.0% | 89.2% |
| 5063123 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.57 | 47.0 | 4.07e-01 | 91.5% | 81.2% |
| 4363239 | 2002.1.1.227 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fibrillarin_2 | 0.56 | 44.0 | 3.03e-01 | 85.8% | 37.8% |
| 2482262 | 109.4.1.275 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rgg_C | 0.54 | 41.0 | 3.21e-01 | 83.0% | 37.0% |
D6
medium
residues 379-423
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 63.0 | 5.75e-01 | 77.8% | 65.5% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 60.0 | 3.87e-01 | 80.0% | 20.0% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.77 | 66.0 | 6.10e-01 | 100.0% | 75.0% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 59.0 | 5.56e-01 | 100.0% | 70.9% |
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.74 | 63.0 | 5.41e-01 | 100.0% | 74.3% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.73 | 61.0 | 4.90e-01 | 95.6% | 55.4% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.73 | 54.0 | 4.84e-01 | 80.0% | 57.8% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.72 | 53.0 | 4.45e-01 | 80.0% | 58.4% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.68 | 57.0 | 4.80e-01 | 100.0% | 63.0% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.66 | 49.0 | 3.36e-01 | 95.6% | 21.7% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.65 | 46.0 | 4.22e-01 | 77.8% | 69.8% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.64 | 54.0 | 4.69e-01 | 100.0% | 84.9% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.61 | 46.0 | 3.89e-01 | 84.4% | 46.3% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.61 | 50.0 | 3.83e-01 | 95.6% | 38.6% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.60 | 42.0 | 2.89e-01 | 73.3% | 28.3% |
| 4wesB03 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.60 | 41.0 | 3.45e-01 | 73.3% | 44.3% |
| 4p32B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 46.0 | 2.93e-01 | 91.1% | 26.5% |
| 2ifaB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 40.0 | 2.78e-01 | 84.4% | 48.3% |
| 5w1uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 45.0 | 2.57e-01 | 91.1% | 48.9% |
| 1f05A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 44.0 | 2.69e-01 | 95.6% | 17.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3635955 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.75 | 64.0 | 4.00e-01 | 100.0% | 24.8% |
| 5061333 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.67 | 50.0 | 4.88e-01 | 91.1% | 89.1% |
| 3704812 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 47.0 | 4.00e-01 | 84.4% | 68.0% |
| 3283934 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.61 | 51.0 | 4.27e-01 | 100.0% | 75.3% |
| 3258260 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.56 | 42.0 | 4.22e-01 | 100.0% | 88.9% |
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.56 | 48.0 | 4.47e-01 | 100.0% | 76.7% |
| 3451017 | 604.1.1.242 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28744 | 0.55 | 43.0 | 3.17e-01 | 100.0% | 68.8% |