putative_M_protein

Euk-Vir

Cytorhabdovirus_fragariae

putative_M_protein__YP_010087627__Cytorhabdovirus_fragariae__2676436

Identity

81.0 mean pLDDT

View cluster (18 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 32-109_136-146

PDB

Domain cluster: rep: matrix_protein__YP_009177018__Alfalfa_dwarf_virus__998864__D14-139

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6hwjA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.55	38.0	2.85e-01	70.8%	70.0%
2pt7G02	3.30.1370.180	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.55	29.0	3.26e-01	85.4%	65.7%
2kskA00	3.30.30.10	Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like	0.54	30.0	3.29e-01	87.6%	64.8%
3eyyA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	33.0	3.46e-01	95.5%	69.5%
5dcaA11	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	38.0	3.68e-01	79.8%	94.3%
6kf9G01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	33.0	3.44e-01	100.0%	72.0%
3d8lA00	1.10.8.940	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12	0.50	33.0	3.32e-01	77.5%	64.8%
6abqB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	34.0	3.20e-01	94.4%	57.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3254281	3241.1.1.1 ↗	alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34	0.53	44.0	3.29e-01	93.3%	86.9%
4943533	225.1.1.0 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	0.52	36.0	3.01e-01	73.0%	94.4%
3840298	101.1.2.394 ↗	alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1	0.51	40.0	3.57e-01	84.3%	65.4%
4071235	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.50	35.0	2.30e-01	74.2%	19.0%

D2 medium residues 110-135_147-180

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1o54A02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.55	39.0	2.83e-01	76.7%	72.5%
4hudA01	3.30.2000.40	Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser	0.54	42.0	2.99e-01	90.0%	67.1%
2xauA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	40.0	3.05e-01	98.3%	77.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4472395	7512.1.1.6 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20	0.54	41.0	2.77e-01	88.3%	46.5%
3236725	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.51	38.0	2.61e-01	85.0%	34.6%