putative_NS2_protein

Euk-Vir

Rodent_pegivirus

putative_NS2_protein__YP_007905978__Rodent_pegivirus__1321391

Identity

81.2 mean pLDDT

Orthornavirae› Kitrinoviricota› Flasuviricetes› Amarillovirales› Flaviviridae› Pegivirus› Rodent_pegivirus

TaxID: 1321391

View cluster (7 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-181

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01538.24 best	HCV_NS2	27.5	3.40e-06	100.0%	50.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jbyA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.61	42.0	4.14e-01	87.7%	66.9%
3rx6A00	1.20.58.1090	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer	0.52	40.0	3.50e-01	82.0%	78.6%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.50	39.0	3.81e-01	82.8%	81.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5047661	633.21.1.0 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107	0.62	37.0	3.67e-01	82.0%	54.6%
3321930	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.59	36.0	3.29e-01	100.0%	46.3%
5020905	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.53	39.0	3.95e-01	77.9%	77.6%
3827719	109.4.1.775 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	43.0	3.30e-01	95.1%	85.9%
3582125	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.50	42.0	3.47e-01	91.0%	84.9%

D2 medium residues 182-241

PDB

Domain cluster: rep: putative_NS2_peptide__YP_009227301__Human_pegivirus_2__1729141__D193-239