←Back to structures
putative_NS3_protein
Euk-VirGB_virus-D
putative_NS3_protein__YP_009256194_putative_NS3_protein__GB_virus-D__2847088
Identity
- Accession:
- YP_009256194_putative_NS3_protein ↗
- Protein ID:
- putative_NS3_protein
- Kingdom:
- euk
Quality
85.1
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Pegivirus›
GB_virus-D
TaxID: 2847088
Cluster
View cluster (30 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 193-321
Domain cluster:
rep: B962L__YP_009703129__African_swine_fever_virus__10497__D53-65_81-193
D2
high
residues 335-474
Domain cluster:
rep: B962L__YP_009703129__African_swine_fever_virus__10497__D237-425
D3
high
residues 538-619
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a1vA03 | 1.10.820.10 | Mainly Alpha › Orthogonal Bundle › RNA Helicase; Chain A, domain 3 › RNA Helicase Chain A , domain 3 | 0.85 | 79.0 | 6.21e-01 | 100.0% | 55.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3710354 | 148.1.3.45 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid | 0.63 | 46.0 | 3.93e-01 | 78.0% | 91.4% |
| 3594656 | 195.1.1.0 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like | 0.54 | 39.0 | 3.59e-01 | 76.8% | 76.4% |
| 9936 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.51 | 39.0 | 3.37e-01 | 82.9% | 71.2% |
D4
medium
residues 1-174
Domain cluster:
rep: 100_kDa_protein__YP_008130303__Citrus_vein_enation_virus__1301220__D379-571
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02907.22 best | Peptidase_S29 | 187.8 | 1.30e-55 | 83.9% | 98.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b6eB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.94 | 91.0 | 8.57e-01 | 100.0% | 87.1% |
| 1befA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.87 | 43.0 | 6.01e-01 | 94.8% | 92.4% |
| 2wv9A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.73 | 62.0 | 6.32e-01 | 88.5% | 100.0% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 69.0 | 6.46e-01 | 100.0% | 92.6% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 65.0 | 6.21e-01 | 100.0% | 90.9% |
| 4m9fA00 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.67 | 63.0 | 5.96e-01 | 98.9% | 90.5% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 36.0 | 4.48e-01 | 98.9% | 81.7% |
| 2ijd101 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 62.0 | 6.20e-01 | 100.0% | 97.8% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 37.0 | 4.45e-01 | 100.0% | 80.8% |
| 1arbA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 39.0 | 4.62e-01 | 98.9% | 86.1% |
| 2sfaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 32.0 | 4.32e-01 | 83.3% | 94.5% |
| 5hmaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 35.0 | 4.43e-01 | 73.6% | 96.2% |
| 1p3cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 33.0 | 4.22e-01 | 97.7% | 90.5% |
| 1agjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 35.0 | 3.91e-01 | 95.4% | 77.6% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.55 | 31.0 | 4.05e-01 | 96.0% | 99.0% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 27.0 | 3.07e-01 | 82.8% | 63.4% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1161323 | 1.1.5.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S29 | 0.94 | 91.0 | 8.96e-01 | 100.0% | 97.2% |
| 4974463 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.81 | 67.0 | 6.92e-01 | 84.5% | 99.4% |
| 5023947 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 64.0 | 6.54e-01 | 82.8% | 90.0% |
| 3184103 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 65.0 | 5.63e-01 | 84.5% | 95.7% |
| 5035938 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.79 | 65.0 | 5.88e-01 | 84.5% | 97.8% |
| 134018 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.77 | 66.0 | 6.89e-01 | 100.0% | 95.7% |
| None | — | 0.77 | 63.0 | 6.51e-01 | 85.1% | 93.4% | |
| 2028446 | 1.1.5.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S31 | 0.77 | 71.0 | 6.35e-01 | 96.6% | 83.5% |
| 3672433 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.76 | 57.0 | 4.76e-01 | 78.2% | 57.9% |
| 3204035 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.75 | 69.0 | 5.43e-01 | 97.1% | 95.9% |
| 169988 | 1.1.5.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S7 | 0.75 | 63.0 | 6.36e-01 | 87.4% | 91.9% |
| 3198319 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 69.0 | 5.44e-01 | 97.1% | 98.2% |
| 4173923 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.72 | 69.0 | 6.13e-01 | 100.0% | 89.8% |
| 140973 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.72 | 69.0 | 6.20e-01 | 100.0% | 82.4% |
| 3948218 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.72 | 69.0 | 6.01e-01 | 100.0% | 87.3% |
| 1290831 | 1.1.17.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › PF30586 | 0.72 | 68.0 | 5.81e-01 | 100.0% | 85.7% |
| 3838205 | 1.1.17.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF7488 | 0.72 | 56.0 | 6.08e-01 | 100.0% | 95.9% |
| 5063379 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.71 | 68.0 | 6.76e-01 | 100.0% | 97.8% |
| 5063188 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 67.0 | 6.23e-01 | 100.0% | 88.4% |
| 3452728 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.71 | 67.0 | 6.32e-01 | 100.0% | 95.6% |
| 3409561 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.71 | 66.0 | 5.97e-01 | 98.9% | 96.1% |
| 3454710 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.71 | 67.0 | 6.10e-01 | 100.0% | 92.7% |
| 3428120 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 67.0 | 5.53e-01 | 100.0% | 95.9% |
| 1311889 | 1.1.5.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.71 | 66.0 | 5.90e-01 | 100.0% | 91.3% |
| 4338510 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 67.0 | 6.17e-01 | 100.0% | 88.4% |
| 5038982 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 65.0 | 5.75e-01 | 98.3% | 87.7% |
| 3439936 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 66.0 | 5.52e-01 | 100.0% | 98.6% |
| 3421481 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 67.0 | 5.63e-01 | 100.0% | 80.7% |
| 3412938 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.70 | 65.0 | 5.82e-01 | 98.9% | 89.1% |
| 3394182 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.70 | 66.0 | 5.94e-01 | 100.0% | 91.4% |
| 4194689 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.70 | 66.0 | 4.97e-01 | 100.0% | 88.2% |
| 4625374 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 66.0 | 5.96e-01 | 100.0% | 87.8% |
| 3448106 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 66.0 | 5.77e-01 | 100.0% | 87.6% |
| 4247805 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.70 | 66.0 | 6.14e-01 | 99.4% | 89.6% |
| 2526961 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 65.0 | 5.97e-01 | 98.9% | 89.6% |
| None | — | 0.70 | 65.0 | 6.06e-01 | 98.9% | 90.1% | |
| 3448847 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.70 | 66.0 | 5.55e-01 | 100.0% | 95.3% |
| None | — | 0.70 | 65.0 | 5.99e-01 | 98.9% | 91.2% | |
| 3269940 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.69 | 66.0 | 5.50e-01 | 100.0% | 90.0% |
| 1096110 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.69 | 65.0 | 5.99e-01 | 98.9% | 91.7% |
| None | — | 0.69 | 65.0 | 5.99e-01 | 98.9% | 91.6% | |
| None | — | 0.69 | 66.0 | 6.11e-01 | 99.4% | 91.0% | |
| 4387060 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.69 | 66.0 | 6.06e-01 | 99.4% | 88.8% |
| 4620869 | 1.1.5.57 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 | 0.69 | 65.0 | 5.07e-01 | 100.0% | 92.9% |
| 4031177 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.69 | 65.0 | 6.02e-01 | 98.9% | 88.8% |
| 3284172 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.69 | 65.0 | 6.15e-01 | 100.0% | 89.8% |
| 3596793 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 65.0 | 5.34e-01 | 100.0% | 93.9% |
| 5040907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 64.0 | 5.75e-01 | 98.3% | 94.3% |
| 3106034 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.69 | 64.0 | 5.70e-01 | 98.9% | 87.0% |
| 170199 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.69 | 63.0 | 5.85e-01 | 97.7% | 96.3% |
| 3367044 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.69 | 64.0 | 5.56e-01 | 100.0% | 96.9% |
| 3989070 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.68 | 64.0 | 5.88e-01 | 98.9% | 95.9% |
| 1826904 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.68 | 64.0 | 5.58e-01 | 98.9% | 87.1% |
| 3663381 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.68 | 64.0 | 5.33e-01 | 100.0% | 97.6% |
| 4882551 | 1.1.5.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A | 0.68 | 53.0 | 5.69e-01 | 95.4% | 93.3% |
| 2512790 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.68 | 64.0 | 5.66e-01 | 100.0% | 88.4% |
| 4883897 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.68 | 64.0 | 5.63e-01 | 100.0% | 88.5% |
| 22093 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.68 | 63.0 | 5.84e-01 | 98.9% | 92.6% |
| 220 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.67 | 63.0 | 5.85e-01 | 99.4% | 92.1% |
| 22087 | 1.1.5.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin | 0.67 | 63.0 | 5.56e-01 | 99.4% | 86.1% |
| 3448643 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 63.0 | 5.96e-01 | 100.0% | 96.6% |
| 3443107 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.67 | 64.0 | 5.78e-01 | 100.0% | 80.9% |
| 3262549 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 63.0 | 5.69e-01 | 100.0% | 88.7% |
| 3066474 | 1.1.17.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 | 0.66 | 62.0 | 5.82e-01 | 100.0% | 93.3% |
| 3614188 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.66 | 62.0 | 5.42e-01 | 100.0% | 97.6% |
| 1099000 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.65 | 59.0 | 5.82e-01 | 99.4% | 91.9% |
| 3838513 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 60.0 | 5.45e-01 | 100.0% | 93.3% |
| 4852372 | 1.1.5.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_C30 | 0.63 | 58.0 | 5.68e-01 | 98.9% | 90.6% |
| 3248403 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 41.0 | 4.54e-01 | 83.9% | 83.0% |
| 3957702 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.63 | 42.0 | 4.80e-01 | 94.3% | 88.1% |