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putative_N_protein
Euk-VirCytorhabdovirus_fragariae
putative_N_protein__YP_010087623__Cytorhabdovirus_fragariae__2676436
Identity
- Accession:
- YP_010087623 ↗
- Protein ID:
- putative_N_protein
- Kingdom:
- euk
Quality
82.4
mean pLDDT
Cluster
View cluster (144 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-131_159-265
Domain cluster:
rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 50.1 | 3.70e-13 | 84.3% | 51.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4d49A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 32.0 | 3.07e-01 | 95.6% | 43.7% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 27.0 | 3.54e-01 | 83.8% | 85.3% |
| 3nb2A02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.54 | 31.0 | 3.48e-01 | 96.1% | 71.0% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.54 | 32.0 | 3.92e-01 | 90.2% | 92.1% |
| 4crwA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 32.0 | 3.11e-01 | 94.6% | 53.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1763953 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.62 | 57.0 | 4.64e-01 | 99.0% | 58.5% |
| 3507992 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.61 | 55.0 | 4.68e-01 | 97.1% | 74.8% |
| 1815422 | 566.1.1.3 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap | 0.60 | 55.0 | 5.37e-01 | 97.5% | 99.1% |
| 3506936 | 109.4.1.258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tra1_central | 0.57 | 36.0 | 3.55e-01 | 95.6% | 58.0% |
| 3712076 | 109.4.1.506 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 | 0.54 | 43.0 | 3.52e-01 | 96.6% | 46.7% |
| 3390061 | 5063.1.1.22 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › LIN9_C | 0.54 | 26.0 | 3.37e-01 | 97.1% | 80.9% |
| 3845802 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 34.0 | 3.31e-01 | 96.6% | 56.2% |
| 3999243 | 109.4.1.749 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › KAP | 0.52 | 32.0 | 2.73e-01 | 96.1% | 37.5% |
D2
high
residues 271-420
Domain cluster:
rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03216.19 best | Rhabdo_ncap_2 | 64.5 | 1.50e-17 | 56.7% | 29.2% |