Back to structures

putative_Nudix_hydrolase

Euk-Vir

Phaeocystis_globosa_virus

putative_Nudix_hydrolase__YP_008052722__Phaeocystis_globosa_virus__251749

Identity

Accession:
YP_008052722 ↗
Protein ID:
putative_Nudix_hydrolase
Kingdom:
euk

Quality

79.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-116
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k6eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 63.0 5.75e-01 91.4% 65.3%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 62.0 5.35e-01 88.8% 55.0%
5qoqA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 63.0 5.69e-01 88.8% 63.8%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 64.0 6.05e-01 87.9% 72.3%
1q33A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.78 66.0 5.67e-01 87.9% 73.1%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 57.0 5.49e-01 88.8% 67.9%
3i9xA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 64.0 5.70e-01 87.9% 73.9%
3mcfA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 58.0 5.56e-01 92.2% 70.0%
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 64.0 5.98e-01 88.8% 72.9%
3cngC02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 57.0 5.24e-01 87.9% 62.9%
3id9B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 55.0 5.33e-01 85.3% 69.0%
3qsjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 65.0 5.15e-01 91.4% 73.9%
3o8sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 55.0 5.24e-01 91.4% 65.7%
5anvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 58.0 5.20e-01 88.8% 60.8%
2o1cA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 62.0 5.71e-01 87.9% 73.5%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 59.0 5.64e-01 88.8% 73.6%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 62.0 5.70e-01 87.9% 70.5%
5deqA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 60.0 5.63e-01 85.3% 74.1%
2a8pA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 63.0 5.28e-01 91.4% 59.9%
2qjoB02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 63.0 5.82e-01 91.4% 73.1%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 58.0 5.21e-01 88.8% 62.3%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 56.0 5.44e-01 88.8% 73.6%
3dupB01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 61.0 5.23e-01 88.8% 58.5%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 58.0 5.23e-01 91.4% 63.4%
3q91B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 54.0 5.21e-01 85.3% 68.7%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 54.0 5.09e-01 87.9% 67.4%
5r4qA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 60.0 4.96e-01 88.8% 58.5%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 59.0 5.41e-01 87.9% 68.9%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 56.0 5.41e-01 88.8% 74.0%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 58.0 5.46e-01 87.9% 73.5%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 56.0 5.10e-01 90.5% 64.9%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 58.0 5.44e-01 87.9% 74.5%
2kdvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 61.0 5.35e-01 92.2% 67.7%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 51.0 5.05e-01 85.3% 72.7%
3exqA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 56.0 5.20e-01 87.1% 68.8%
2yyhA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 56.0 5.27e-01 87.9% 71.7%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 56.0 5.20e-01 86.2% 71.3%
1k2eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 56.0 5.03e-01 85.3% 70.4%
3fjyA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 59.0 5.20e-01 91.4% 73.6%
3j7ye00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 54.0 5.17e-01 88.8% 76.1%
4j7hA02 3.90.79.40 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit 0.63 51.0 4.53e-01 86.2% 61.2%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.62 38.0 3.75e-01 88.8% 55.9%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3756709 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 62.0 5.23e-01 91.4% 51.4%
3777810 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 63.0 6.79e-01 89.7% 97.0%
3944800 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 61.0 5.85e-01 87.9% 73.1%
3626342 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 65.0 5.97e-01 87.9% 74.5%
3221723 221.4.1.23 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, PF25969 0.77 65.0 4.86e-01 87.9% 43.5%
4963296 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 64.0 5.33e-01 88.8% 54.1%
4937681 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.77 57.0 5.69e-01 85.3% 74.2%
3992631 221.4.1.23 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, PF25969 0.77 64.0 4.84e-01 87.9% 42.9%
3991309 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 65.0 5.12e-01 91.4% 46.8%
4025046 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 64.0 5.30e-01 87.9% 53.7%
3963568 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 64.0 4.74e-01 88.8% 39.3%
1124600 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 65.0 5.97e-01 88.8% 72.5%
4956149 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 62.0 5.62e-01 88.8% 66.0%
4965094 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 61.0 5.72e-01 87.9% 70.0%
5029748 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 62.0 5.84e-01 91.4% 73.3%
4934087 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 63.0 5.36e-01 87.9% 57.8%
372265 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 55.0 5.31e-01 85.3% 68.5%
3276905 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 63.0 4.99e-01 87.9% 59.4%
4953121 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 57.0 5.60e-01 87.9% 73.6%
3296180 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 58.0 5.07e-01 88.8% 57.1%
4927145 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 59.0 5.40e-01 88.8% 65.5%
3805402 221.4.1.24 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 0.74 63.0 4.49e-01 88.8% 34.8%
3303285 221.4.1.24 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 0.74 63.0 4.46e-01 88.8% 34.3%
3509290 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 58.0 6.02e-01 87.9% 85.5%
3934983 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 63.0 4.91e-01 88.8% 65.1%
4941147 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 57.0 5.35e-01 87.9% 66.4%
4937578 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 60.0 5.65e-01 88.8% 71.9%
5058232 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 58.0 5.60e-01 88.8% 73.1%
3214142 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 62.0 4.98e-01 88.8% 47.9%
4487024 221.4.1.13 a+b two layers › beta-Grasp › Nudix › Nudix › Nudt16-like 0.74 64.0 5.27e-01 91.4% 59.0%
5041586 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 60.0 5.60e-01 88.8% 70.7%
3911909 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.74 62.0 4.91e-01 88.8% 52.7%
3164781 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 62.0 5.63e-01 88.8% 73.3%
3255336 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 62.0 5.02e-01 88.8% 53.7%
5017151 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 58.0 5.15e-01 88.8% 60.0%
5061791 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 57.0 5.43e-01 87.9% 71.5%
1247755 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 63.0 5.65e-01 91.4% 67.5%
5068681 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 61.0 5.63e-01 87.9% 73.1%
5079541 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 61.0 5.40e-01 87.9% 65.6%
4996467 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 58.0 5.42e-01 87.9% 69.3%
3722325 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 58.0 5.06e-01 91.4% 57.1%
5074099 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 59.0 5.41e-01 85.3% 69.0%
5058019 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 59.0 5.46e-01 92.2% 69.4%
4974972 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 57.0 5.16e-01 87.9% 64.4%
1289944 221.4.1.8 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 0.71 60.0 4.79e-01 88.8% 53.8%
4960496 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 56.0 5.08e-01 87.9% 64.0%
3655806 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 57.0 5.30e-01 91.4% 68.8%
6244 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 56.0 5.13e-01 90.5% 65.8%
4637002 221.4.1.13 a+b two layers › beta-Grasp › Nudix › Nudix › Nudt16-like 0.70 60.0 4.93e-01 91.4% 54.4%
365187 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 57.0 5.17e-01 87.9% 64.9%
5051216 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 59.0 5.27e-01 87.9% 65.8%
4656008 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 58.0 5.18e-01 88.8% 65.4%
3286004 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 58.0 5.26e-01 91.4% 67.3%
4943669 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.70 58.0 5.07e-01 87.9% 61.2%
5031177 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 57.0 5.34e-01 87.9% 71.4%
4423374 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 57.0 5.29e-01 88.8% 69.7%
3677800 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 60.0 5.37e-01 91.4% 79.9%
4937543 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 59.0 5.48e-01 97.4% 73.1%
3967221 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.69 64.0 4.74e-01 100.0% 56.4%
5047168 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 56.0 5.23e-01 88.8% 71.4%
6241 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 56.0 5.03e-01 85.3% 70.4%
3592497 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.68 55.0 5.30e-01 86.2% 80.8%
1161073 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.67 59.0 4.98e-01 91.4% 78.0%
3519224 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.67 54.0 4.69e-01 87.9% 59.4%
3989003 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.66 57.0 5.05e-01 100.0% 66.0%
3321639 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.66 60.0 5.24e-01 97.4% 70.3%
4646191 221.4.1.5 a+b two layers › beta-Grasp › Nudix › Nudix › Hexose_dehydrat 0.64 52.0 4.12e-01 86.2% 44.8%
4656202 221.4.1.5 a+b two layers › beta-Grasp › Nudix › Nudix › Hexose_dehydrat 0.63 51.0 3.42e-01 86.2% 23.1%
3265336 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 37.0 3.79e-01 76.7% 70.9%
3517966 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.50 40.0 3.95e-01 85.3% 87.2%
D2 medium residues 117-177
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.54 41.0 3.32e-01 85.2% 41.0%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.52 39.0 3.45e-01 86.9% 91.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3727519 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.53 36.0 2.26e-01 73.8% 65.6%