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putative_P0_protein
Euk-VirTobacco_vein_distorting_virus
putative_P0_protein__YP_001931929__Tobacco_vein_distorting_virus__192203
Identity
- Accession:
- YP_001931929 ↗
- Protein ID:
- putative_P0_protein
- Kingdom:
- euk
Quality
82.5
mean pLDDT
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 115-164
Domain cluster:
rep: putative_P0_protein__YP_004207915__Pepper_vein_yellows_virus__909827__D115-165
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04662.19 best | Luteo_PO | 37.7 | 2.50e-09 | 100.0% | 20.7% |
D2
medium
residues 1-57_59-114
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.62 | 32.0 | 3.80e-01 | 92.9% | 73.0% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.54 | 33.0 | 3.67e-01 | 79.6% | 78.4% |
| 4gt8A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 40.0 | 3.85e-01 | 81.4% | 81.2% |
| 4r3aA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 40.0 | 3.76e-01 | 82.3% | 81.7% |
| 2fphX01 | 3.30.1370.160 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 29.0 | 3.42e-01 | 81.4% | 79.2% |
| 3c18A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 26.0 | 3.33e-01 | 98.2% | 89.5% |
| 5idmA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 39.0 | 3.38e-01 | 81.4% | 78.5% |
| 3zxoA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 39.0 | 3.79e-01 | 82.3% | 86.4% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.51 | 33.0 | 3.60e-01 | 82.3% | 82.2% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 3.32e-01 | 84.1% | 96.4% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.50 | 36.0 | 3.16e-01 | 75.2% | 92.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962953 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.69 | 36.0 | 4.32e-01 | 100.0% | 76.0% |
| 4972277 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.63 | 37.0 | 4.24e-01 | 100.0% | 80.0% |
| 3241661 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 34.0 | 3.96e-01 | 94.7% | 77.3% |
| 5044537 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.61 | 36.0 | 4.16e-01 | 100.0% | 81.2% |
| 3757456 | 327.11.2.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › MOEP19 | 0.61 | 31.0 | 3.82e-01 | 92.9% | 81.5% |
| 3690099 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 33.0 | 3.40e-01 | 92.9% | 63.6% |
| 3358067 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.52 | 44.0 | 3.29e-01 | 95.6% | 97.1% |
| 4934172 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.52 | 28.0 | 3.44e-01 | 95.6% | 84.3% |
| 5030563 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.51 | 27.0 | 2.96e-01 | 95.6% | 58.9% |
| 4992480 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.51 | 27.0 | 3.02e-01 | 98.2% | 62.2% |
| 3990493 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 32.0 | 3.52e-01 | 96.5% | 78.9% |
| 3192371 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.50 | 45.0 | 3.08e-01 | 100.0% | 93.1% |
| 4403429 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.50 | 38.0 | 3.48e-01 | 81.4% | 77.4% |
| 3839595 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.50 | 34.0 | 3.50e-01 | 93.8% | 72.7% |
D3
medium
residues 170-249
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04662.19 best | Luteo_PO | 35.5 | 1.20e-08 | 62.5% | 23.6% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 49.0 | 3.87e-01 | 73.8% | 81.3% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 47.0 | 4.66e-01 | 76.2% | 97.7% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 53.0 | 4.41e-01 | 90.0% | 72.8% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 31.0 | 3.28e-01 | 80.0% | 50.0% |
| 4i4cB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.62 | 54.0 | 3.53e-01 | 100.0% | 96.7% |
| 1q8dA00 | 1.10.220.110 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GDNF binding domain | 0.61 | 44.0 | 4.12e-01 | 76.2% | 89.0% |
| 4fx5A03 | 1.20.120.1690 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 45.0 | 4.20e-01 | 78.8% | 67.0% |
| 5m72A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 50.0 | 4.08e-01 | 91.3% | 76.0% |
| 3zheC01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 52.0 | 4.02e-01 | 97.5% | 56.0% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 40.0 | 3.88e-01 | 70.0% | 61.8% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.59 | 44.0 | 4.06e-01 | 77.5% | 98.0% |
| 3p4tA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 48.0 | 3.89e-01 | 91.3% | 82.0% |
| 4fjvA02 | 1.20.1300.20 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 | 0.57 | 39.0 | 3.29e-01 | 71.2% | 69.4% |
| 6k41R00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.57 | 48.0 | 3.51e-01 | 96.2% | 64.6% |
| 3t57A02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.56 | 38.0 | 3.96e-01 | 71.2% | 78.7% |
| 6t0bf00 | 1.25.40.40 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI | 0.56 | 43.0 | 4.02e-01 | 83.7% | 68.6% |
| 2z1qB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 47.0 | 3.92e-01 | 91.3% | 77.2% |
| 4mqbB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.40e-01 | 95.0% | 65.0% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 40.0 | 3.09e-01 | 81.2% | 90.7% |
| 2x6hA03 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.53 | 45.0 | 3.44e-01 | 97.5% | 95.5% |
| 4k0dA00 | 1.20.120.1730 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 42.0 | 3.44e-01 | 86.3% | 52.4% |
| 4wbyA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.51 | 44.0 | 3.23e-01 | 97.5% | 38.1% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.28e-01 | 93.8% | 83.7% |
| 1z3iX03 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.51 | 36.0 | 3.40e-01 | 75.0% | 80.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3189696 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 56.0 | 4.90e-01 | 81.2% | 60.9% |
| 3834387 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 4.33e-01 | 100.0% | 68.9% |
| 3945101 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 47.0 | 4.21e-01 | 73.8% | 80.0% |
| 3682991 | 3291.1.1.111 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › BPS1 | 0.61 | 46.0 | 3.71e-01 | 80.0% | 89.7% |
| 3622342 | 5001.1.1.35 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srsx | 0.61 | 42.0 | 3.58e-01 | 73.8% | 72.1% |
| 3977998 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.60 | 41.0 | 3.31e-01 | 71.2% | 70.9% |
| 3465231 | 192.15.1.189 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Frigida | 0.59 | 42.0 | 4.25e-01 | 75.0% | 97.5% |
| 3992995 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 42.0 | 3.99e-01 | 77.5% | 85.4% |
| 3348687 | 109.4.1.1156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif | 0.58 | 50.0 | 4.33e-01 | 98.8% | 84.6% |
| 3859190 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.58 | 42.0 | 3.11e-01 | 77.5% | 49.3% |
| 3420318 | 604.16.1.0 ↗ | alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain | 0.57 | 40.0 | 3.82e-01 | 75.0% | 75.0% |
| 3480625 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 44.0 | 3.44e-01 | 85.0% | 92.4% |
| 3486453 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.56 | 40.0 | 3.70e-01 | 75.0% | 88.6% |
| 3924514 | 109.4.1.83 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf | 0.55 | 46.0 | 3.20e-01 | 93.8% | 62.4% |
| 3664570 | 5069.1.3.53 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CASP_dom | 0.54 | 45.0 | 4.17e-01 | 91.3% | 93.0% |
| 4877500 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 43.0 | 4.02e-01 | 92.5% | 93.2% |
| 3341704 | 109.4.1.1280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long | 0.53 | 44.0 | 3.23e-01 | 96.2% | 55.4% |
| 4003429 | 605.1.1.149 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › 7tm_1 | 0.51 | 43.0 | 3.84e-01 | 95.0% | 83.5% |