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putative_P_protein

Euk-Vir

Cytorhabdovirus_fragariae

putative_P_protein__YP_010087625__Cytorhabdovirus_fragariae__2676436

Identity

Accession:: YP_010087625 ↗
Protein ID:: putative_P_protein
Kingdom:: euk

Quality

69.2 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-229

PDB

Domain cluster: rep: P_protein__YP_002308372__Lettuce_yellow_mottle_virus__471285__D60-175

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x04A00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.73	46.0	4.00e-01	71.9%	43.0%
4wpeA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.72	59.0	4.60e-01	89.6%	42.2%
4fzsA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.70	48.0	4.12e-01	80.0%	45.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3582569	3755.3.1.348 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › zf-C4H2	0.81	59.0	4.73e-01	74.8%	41.6%
4933354	3755.3.1.637 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121	0.74	64.0	5.12e-01	89.6%	65.4%
3630220	3755.3.1.103 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Golgin_A5	0.74	61.0	5.24e-01	85.2%	84.1%
3235302	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.71	62.0	4.92e-01	91.9%	52.9%
3712016	2004.1.1.250 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd	0.63	47.0	3.14e-01	75.6%	74.5%

D2 high residues 294-354

PDB

Domain cluster: representative

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3t4rA00	1.20.120.1590	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.90	81.0	7.67e-01	100.0%	83.3%
2hdoA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.71	48.0	4.79e-01	70.5%	98.4%
3s6jE02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.71	48.0	4.63e-01	70.5%	98.6%
2ex3B02	1.20.1270.230	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › DNA terminal protein Gp3, priming domain	0.64	56.0	5.14e-01	100.0%	79.0%
2g38B00	1.20.1260.20	Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily	0.63	44.0	3.21e-01	73.8%	83.2%
3tjmA02	1.10.1470.20	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2	0.62	43.0	3.81e-01	73.8%	82.2%
2oznB01	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.61	50.0	4.63e-01	91.8%	91.3%
3h36A00	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.59	42.0	3.91e-01	75.4%	60.3%
4nqwA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.58	50.0	4.54e-01	96.7%	75.0%
4azcA02	1.20.1270.90	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like	0.57	44.0	4.54e-01	86.9%	94.9%
2nrkA00	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.56	47.0	3.57e-01	100.0%	76.4%
7jv7B01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.55	46.0	3.63e-01	100.0%	41.8%
1g71A02	1.10.8.160	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › DNA primase S; domain 2	0.55	43.0	3.67e-01	88.5%	85.2%
1g8jA02	3.40.50.740	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	42.0	2.88e-01	90.2%	64.0%
1mswD04	1.10.287.280	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	37.0	3.48e-01	75.4%	59.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
185545	3571.1.1.1 ↗	alpha arrays › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › Lettuce necrotic yellow virus phosphoprotein C-terminal domain › LNYV_PP_C	0.90	81.0	7.67e-01	100.0%	83.3%
3674195	103.9.1.1 ↗	alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain › WPP	0.71	59.0	4.93e-01	91.8%	82.9%
3580090	5067.1.1.0 ↗	alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain	0.70	60.0	4.69e-01	95.1%	57.7%
3997160	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.70	57.0	4.91e-01	91.8%	72.0%
55476	4192.1.1.0 ↗	alpha bundles › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain › DNA terminal protein C-terminal domain	0.64	56.0	5.17e-01	100.0%	80.0%
5076902	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.64	52.0	4.32e-01	91.8%	84.5%
3599116	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.63	49.0	4.22e-01	83.6%	100.0%
4032129	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.63	52.0	5.15e-01	95.1%	89.2%
4120356	103.5.1.4 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2	0.62	48.0	4.16e-01	100.0%	53.0%
5072245	103.5.1.4 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2	0.62	45.0	4.70e-01	95.1%	89.1%
4361196	102.1.3.8 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Mab-21_C	0.62	55.0	4.74e-01	100.0%	91.6%
3258895	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.62	43.0	4.70e-01	73.8%	94.0%
4203087	601.7.1.48 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PF29375	0.61	48.0	3.99e-01	88.5%	74.8%
4038157	103.5.1.0 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like	0.60	46.0	4.97e-01	98.4%	100.0%
3245015	3831.1.1.0 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311	0.59	46.0	4.35e-01	91.8%	90.0%
4215393	4067.1.1.1 ↗	alpha bundles › FdhE-like › FdhE-like › FdhE-like › FdhE	0.56	41.0	3.11e-01	80.3%	49.7%
3594132	601.3.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain	0.56	49.0	4.17e-01	100.0%	83.5%
5022861	103.5.1.4 ↗	alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2	0.55	45.0	4.40e-01	98.4%	84.3%