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putative_RNA-dependent_RNA_polymerase

Euk-Vir

Alphachrysovirus_cerasi

putative_RNA-dependent_RNA_polymerase__YP_001531163__Alphachrysovirus_cerasi__284687

Identity

Accession:: YP_001531163 ↗
Protein ID:: putative_RNA-dependent_RNA_polymerase
Kingdom:: euk

Quality

70.2 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Alphachrysovirus› Alphachrysovirus_cerasi

TaxID: 284687

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-234

PDB

Domain cluster: rep: VP2__YP_009665170__Eriocheir_sinensis_reovirus__273810__D721-872

D2 medium residues 367-386_795-854

PDB

D3 medium residues 430-516_564-609_647-704

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009336713__Beihai_toti-like_virus_4__1922734__D167-187_213-323_360-427

D4 medium residues 610-646_705-794

PDB

Domain cluster: rep: RNA-directed_RNA-polymerase__YP_009667012__Colletotrichum_gloeosporioides_chrysovirus_1__1766766__D621-641_716-788

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	48.7	7.90e-13	73.2%	18.3%

D5 medium residues 967-1087

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009507948__Verticillium_dahliae_chrysovirus_1__759389__D987-1108

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3uorB02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.59	43.0	3.63e-01	76.0%	97.1%
4mfiA00	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.59	43.0	3.00e-01	76.0%	68.5%
5ci5B02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.58	40.0	3.34e-01	70.2%	99.5%
2icwG02	1.10.10.530	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2	0.58	32.0	3.68e-01	98.3%	73.0%
1eu8A02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.57	41.0	3.38e-01	74.4%	100.0%
4rjzA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.55	40.0	3.42e-01	75.2%	100.0%
4d3zA02	1.10.132.130	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.55	37.0	3.91e-01	93.4%	76.4%
1txuA01	1.10.246.120	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.54	38.0	4.29e-01	97.5%	92.6%
3otxB01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.53	44.0	3.44e-01	92.6%	88.9%
4bemJ00	1.20.120.610	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase	0.52	41.0	3.58e-01	84.3%	66.3%
3gkfA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.51	38.0	2.97e-01	78.5%	75.4%
4ix7A00	1.10.10.2590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain	0.50	34.0	3.49e-01	95.9%	72.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3290572	7523.1.1.28 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8	0.58	43.0	3.68e-01	78.5%	99.0%
3341345	6026.1.1.0 ↗	alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain	0.53	40.0	3.91e-01	76.9%	83.1%
5062355	1075.1.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain	0.52	38.0	3.10e-01	76.0%	88.7%