putative_RNA-dependent_RNA_polymerase

Euk-Vir

Pepper_cryptic_virus_2

putative_RNA-dependent_RNA_polymerase__YP_009351838__Pepper_cryptic_virus_2__1050903

Identity

94.1 mean pLDDT

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-99_403-478

PDB

Domain cluster: rep: RdRp__YP_009329867__Xinzhou_partiti-like_virus_1__1923776__D22-101_376-450

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4uz0A00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.62	29.0	3.52e-01	83.9%	67.8%
1doqA00	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.56	28.0	3.63e-01	90.5%	88.4%
1nxhA00	1.10.3070.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein MTH393 › EhaM-like	0.50	25.0	2.68e-01	76.6%	50.8%

D2 medium residues 100-113_177-194_260-283_301-325

PDB

Domain cluster: rep: RNA_dependent_RNA_polymerase__YP_006390091__Persimmon_cryptic_virus__1183241__D19-34_183-216_305-321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	25.7	6.60e-06	75.3%	14.4%

D3 medium residues 114-176_195-227_284-300

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009466859__Pepper_cryptic_virus_1__369643__D66-82_179-212_266-317

D4 medium residues 228-259_326-402

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	57.1	1.90e-15	73.4%	20.2%