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putative_RNA-dependent_RNA_polymerase

Euk-Vir

Heterobasidion_partitivirus_3

putative_RNA-dependent_RNA_polymerase__YP_009508058__Heterobasidion_partitivirus_3__631431

Identity

Accession:
YP_009508058 ↗
Protein ID:
putative_RNA-dependent_RNA_polymerase
Kingdom:
euk

Quality

81.1 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Alphapartitivirus› Heterobasidion_partitivirus_3

TaxID: 631431

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 465-574
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_656506__Raphanus_sativus_cryptic_virus_1__348449__D32-57_444-535
D2 medium residues 33-105_207-228
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3340741 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 28.0 3.02e-01 87.4% 60.0%
D3 medium residues 106-145_229-253_299-368
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 26.0 3.09e-01 77.0% 71.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368415 4009.1.1.24 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › AgrB 0.52 37.0 3.79e-01 74.8% 92.6%
4982760 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 24.0 3.29e-01 81.5% 88.6%
5043893 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.50 27.0 3.60e-01 81.5% 100.0%
4985370 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 30.0 3.62e-01 81.5% 90.0%
D4 medium residues 146-206
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009508053__Heterobasidion_partitivirus_13__1469906__D134-187
D5 medium residues 254-298_369-459
PDB
Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325