putative_RNA-dependent_RNA_polymerase

Euk-Vir

Bipolaris_maydis_partitivirus_2

putative_RNA-dependent_RNA_polymerase__YP_009551641__Bipolaris_maydis_partitivirus_2__2483307

Identity

77.9 mean pLDDT

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Bipolaris_maydis_partitivirus_2

TaxID: 2483307

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 535-637

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_007889823__Red_clover_cryptic_virus_2__1323524__D588-687

D2 medium residues 132-151_299-338_438-534

PDB

Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181

D3 medium residues 152-162_339-437

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ha8A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.66	21.0	2.81e-01	70.0%	49.2%
3hwcA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.60	30.0	2.40e-01	85.5%	23.3%
2mpkA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	36.0	4.27e-01	77.3%	100.0%
8be0A01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.52	31.0	2.61e-01	72.7%	34.0%
1grjA01	1.10.287.180	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain	0.51	31.0	3.75e-01	86.4%	91.9%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.50	36.0	3.60e-01	94.5%	70.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4161299	101.1.2.8 ↗	alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C	0.63	27.0	2.84e-01	76.4%	42.0%
3994451	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.60	35.0	3.97e-01	86.4%	77.5%
3392388	3003.1.1.4 ↗	a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM8_N	0.53	37.0	3.63e-01	88.2%	65.8%
5053693	101.1.2.673 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N	0.50	30.0	2.90e-01	77.3%	49.6%
4154255	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.50	36.0	3.91e-01	87.3%	87.4%

D4 medium residues 163-298

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033072	101.1.9.32 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT	0.51	26.0	3.18e-01	71.3%	75.3%
4975221	5061.1.1.1 ↗	alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY	0.50	43.0	3.03e-01	96.3%	84.3%