putative_RNA-dependent_RNA_polymerase

Euk-Vir

Patrinia_mild_mottle_virus

putative_RNA-dependent_RNA_polymerase__YP_010087617__Patrinia_mild_mottle_virus__2518104

Identity

75.4 mean pLDDT

View cluster (58 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337296__Changjiang_tombus-like_virus_3__1922817__D1-56

D2 medium residues 234-318

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_002302259__Carrot_mottle_virus__68033__D254-317

D3 medium residues 319-345_369-394_565-619

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase_3D__NP_740737__Parechovirus_A__1803956__D11-60_159-185_260-299

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	64.9	8.70e-18	54.6%	10.7%

D4 medium residues 358-368_395-414_450-507

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	72.3	4.80e-20	83.2%	11.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.71	65.0	4.27e-01	100.0%	46.8%

D5 medium residues 508-550_620-692

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009337274__Changjiang_tombus-like_virus_14__1922807__D158-196_253-344

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	90.0	2.10e-25	64.7%	15.0%
PF00998.29	RdRP_3	56.7	2.70e-15	41.4%	8.8%

D6 medium residues 693-819

PDB

Domain cluster: rep: P95_replicase__YP_009259667__Pelargonium_leaf_curl_virus__35280__D527-559_693-852

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00998.29 best	RdRP_3	71.1	1.10e-19	89.0%	23.5%