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putative_RNA_dependent_RNA_polymerase

Euk-Vir

Cassava_virus_C

putative_RNA_dependent_RNA_polymerase__YP_003104770__Cassava_virus_C__561576

Identity

Accession:
YP_003104770 ↗
Protein ID:
putative_RNA_dependent_RNA_polymerase
Kingdom:
euk

Quality

67.5 mean pLDDT

Taxonomy

Orthornavirae› Lenarviricota› Miaviricetes› Ourlivirales› Botourmiaviridae› Ourmiavirus› Cassava_virus_C

TaxID: 561576

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-191
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009333277__Beihai_narna-like_virus_2__1922447__D1-197
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hl4A01 1.10.8.1310 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 32.0 3.50e-01 85.6% 51.4%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.61 23.0 3.04e-01 94.4% 59.2%
1u7gA00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.57 46.0 3.59e-01 85.0% 86.2%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.53 27.0 3.53e-01 97.8% 84.0%
1s35A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 24.0 3.00e-01 98.3% 67.3%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 32.0 3.62e-01 96.7% 81.2%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 33.0 3.73e-01 76.1% 83.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048443 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.58 50.0 3.96e-01 92.8% 84.9%
4976919 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.57 25.0 3.30e-01 80.6% 72.0%
3810299 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.55 42.0 3.68e-01 78.9% 82.2%
3979915 3352.1.1.10 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › DUF6056 0.52 44.0 3.57e-01 92.8% 84.4%
3952580 3352.1.1.28 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT+PMT_4TMC 0.51 43.0 3.31e-01 92.2% 86.1%
5028184 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.50 36.0 3.26e-01 82.8% 53.9%
D2 medium residues 199-256_312-364_409-475
PDB
Domain cluster: rep: putative_RNA_dependent_RNA_polymerase__YP_002019757__Ourmia_melon_virus__186786__D220-290_323-370_411-481
D3 medium residues 257-311
PDB
D4 medium residues 365-408_476-568
PDB
Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009337087__Hubei_narna-like_virus_4__1922958__D375-415_481-588
D5 medium residues 569-656
PDB
D6 medium residues 657-738
PDB