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putative_RNA_dependent_RNA_polymerase

Euk-Vir

Aspergillus_ochraceous_virus

putative_RNA_dependent_RNA_polymerase__YP_009665972__Aspergillus_ochraceous_virus__358008

Identity

Accession:: YP_009665972 ↗
Protein ID:: putative_RNA_dependent_RNA_polymerase
Kingdom:: euk

Quality

76.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Duplopiviricetes› Durnavirales› Partitiviridae› Gammapartitivirus› Aspergillus_ochraceous_virus

TaxID: 358008

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 441-502

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	24.2	1.80e-05	83.9%	11.6%

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3t57A02	1.20.1180.10	Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain	0.76	58.0	5.49e-01	85.5%	69.3%
6fhpD00	1.10.390.10	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2	0.64	48.0	4.88e-01	83.9%	93.5%
4wqkA00	3.30.460.40	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 ›	0.64	52.0	3.81e-01	91.9%	74.3%
4atgA00	1.25.40.770	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAF6, C-terminal HEAT repeat domain	0.64	54.0	3.82e-01	95.2%	37.9%
3m0fB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.64	53.0	4.31e-01	95.2%	77.2%
1elkA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.62	51.0	3.90e-01	93.5%	50.3%
2f07B00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.62	50.0	3.57e-01	90.3%	65.8%
1khvA05	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.62	51.0	4.50e-01	96.8%	74.2%
2lhrA00	1.20.58.1270	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	47.0	4.43e-01	91.9%	85.9%
3d2yA02	1.10.101.10	Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD	0.58	40.0	3.62e-01	71.0%	84.5%
3rjvA02	1.25.40.740	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	44.0	4.37e-01	83.9%	92.2%
4hn9A02	1.20.58.2180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	40.0	3.93e-01	74.2%	66.2%
3bvoB01	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.58	45.0	3.96e-01	88.7%	73.5%
2a2jA00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.56	44.0	3.06e-01	83.9%	86.2%
2pftA00	1.20.1280.170	Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70	0.56	46.0	2.73e-01	95.2%	28.3%
1dk8A02	1.10.167.10	Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2	0.56	44.0	4.06e-01	90.3%	77.6%
2lo6A00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	45.0	3.46e-01	93.5%	55.8%
1xb4B01	1.10.10.570	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1"	0.55	44.0	3.84e-01	93.5%	82.7%
2wzkA01	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.55	45.0	3.64e-01	95.2%	75.6%
2jbrA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.54	42.0	3.47e-01	87.1%	63.9%
7yq0B01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	41.0	3.18e-01	91.9%	51.2%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.68	51.0	3.32e-01	82.3%	21.8%
4804034	304.48.1.12 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol	0.65	54.0	4.47e-01	100.0%	82.3%
3601631	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	50.0	3.20e-01	93.5%	17.5%
3427512	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.60	43.0	4.32e-01	79.0%	75.4%
4316798	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.58	47.0	3.23e-01	93.5%	24.5%
3751351	3796.1.1.0 ↗	alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain	0.58	43.0	4.26e-01	85.5%	78.5%
3360995	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.56	41.0	2.78e-01	82.3%	42.2%
3194880	109.4.1.109 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1	0.55	46.0	3.01e-01	100.0%	46.2%
3543872	170.1.1.22 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30901	0.54	44.0	4.11e-01	93.5%	93.8%
3885941	101.1.1.132 ↗	alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N	0.53	41.0	3.97e-01	83.9%	97.1%
3939135	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.52	42.0	3.45e-01	95.2%	76.2%

D2 medium residues 91-110_145-247_311-351

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_656506__Raphanus_sativus_cryptic_virus_1__348449__D107-229_290-339

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	79.5	3.00e-22	77.4%	24.4%

D3 medium residues 111-144_248-310_352-434

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	40.7	1.80e-10	46.7%	21.3%
PF00680.26	RdRP_1	37.9	1.30e-09	35.6%	11.8%