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putative_RNA_polymerase_subunit_RPB5

Euk-Vir

Aureococcus_anophagefferens_virus

putative_RNA_polymerase_subunit_RPB5__YP_009052298__Aureococcus_anophagefferens_virus__1474867

Identity

Accession:
YP_009052298 ↗
Protein ID:
putative_RNA_polymerase_subunit_RPB5
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Imitervirales› Schizomimiviridae› Kratosvirus› Aureococcus_anophagefferens_virus

TaxID: 1474867

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-112
PDB
D2 high residues 124-187
PDB
Domain cluster: rep: DNA-directed_RNA_polymerase_II_subunit_RPB5__YP_008052525__Phaeocystis_globosa_virus__251749__D146-209
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01191.25 best RNA_pol_Rpb5_C 36.7 4.00e-09 98.4% 72.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.80 72.0 6.89e-01 100.0% 86.3%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.66 34.0 3.17e-01 100.0% 40.0%
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.60 50.0 3.61e-01 100.0% 95.7%
1e4eB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 35.0 2.64e-01 71.9% 78.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4861748 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.86 79.0 7.60e-01 100.0% 88.7%
4838977 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.86 77.0 7.28e-01 100.0% 82.9%
4600910 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.85 77.0 7.46e-01 100.0% 90.0%
4253107 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.84 75.0 7.23e-01 100.0% 86.3%
3824571 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.84 75.0 7.13e-01 100.0% 84.0%
3607644 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.82 74.0 7.02e-01 100.0% 85.1%
3596039 840.1.1.0 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.81 71.0 6.96e-01 98.4% 88.6%
3033324 840.1.1.1 ↗ a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.77 67.0 6.53e-01 100.0% 87.5%
3180008 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.62 44.0 3.88e-01 75.0% 95.7%
3244285 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.53 41.0 3.92e-01 100.0% 70.7%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 30.0 2.81e-01 98.4% 43.8%
3934867 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 35.0 1.99e-01 71.9% 19.9%
4947896 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 45.0 3.60e-01 100.0% 67.2%