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putative_RNA_polymerase_subunit_Rpb10
Euk-VirAureococcus_anophagefferens_virus
putative_RNA_polymerase_subunit_Rpb10__YP_009052345__Aureococcus_anophagefferens_virus__1474867
Identity
- Accession:
- YP_009052345 ↗
- Protein ID:
- putative_RNA_polymerase_subunit_Rpb10
- Kingdom:
- euk
Quality
69.3
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Schizomimiviridae›
Kratosvirus›
Aureococcus_anophagefferens_virus
TaxID: 1474867
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-30_47-73
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01194.23 best | RNA_pol_N | 56.5 | 3.50e-15 | 100.0% | 82.8% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h5xA04 | 1.20.960.20 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.58 | 45.0 | 3.74e-01 | 90.0% | 46.3% |
| 2ouxA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.57 | 41.0 | 3.15e-01 | 80.0% | 31.2% |
| 1qsaA02 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.56 | 41.0 | 3.81e-01 | 90.0% | 60.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4931030 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.64 | 51.0 | 4.11e-01 | 98.0% | 87.8% |
| 3214939 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.55 | 40.0 | 2.96e-01 | 84.0% | 29.7% |
| 3354705 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 39.0 | 2.83e-01 | 86.0% | 24.0% |
| 3458250 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.52 | 40.0 | 3.01e-01 | 88.0% | 50.0% |
| 3468221 | 109.4.1.1741 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_At1g68980 | 0.52 | 39.0 | 2.53e-01 | 90.0% | 67.4% |