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putative_RNA_polymerase_subunit
Euk-VirAnomala_cuprea_entomopoxvirus
putative_RNA_polymerase_subunit__YP_009001517__Anomala_cuprea_entomopoxvirus__62099
Identity
- Accession:
- YP_009001517 ↗
- Protein ID:
- putative_RNA_polymerase_subunit
- Kingdom:
- euk
Quality
85.1
mean pLDDT
Cluster
View cluster (40 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-92
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y14D01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.83 | 67.0 | 7.04e-01 | 100.0% | 94.5% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.75 | 63.0 | 6.52e-01 | 96.2% | 100.0% |
| 1go3E02 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.74 | 64.0 | 6.46e-01 | 100.0% | 96.3% |
| 3ayhB01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.67 | 58.0 | 5.84e-01 | 100.0% | 100.0% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.67 | 48.0 | 4.04e-01 | 96.2% | 43.6% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.67 | 52.0 | 5.50e-01 | 98.8% | 98.5% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.66 | 50.0 | 5.41e-01 | 97.5% | 98.5% |
| 1zhsA01 | 3.30.1490.230 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.66 | 44.0 | 4.97e-01 | 96.2% | 100.0% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.63 | 46.0 | 4.90e-01 | 98.8% | 100.0% |
| 3pcoB06 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.60 | 48.0 | 4.63e-01 | 98.8% | 75.5% |
| 5ajiB03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 45.0 | 4.32e-01 | 100.0% | 70.5% |
| 6urtA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.18e-01 | 100.0% | 73.9% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 49.0 | 3.61e-01 | 98.8% | 40.2% |
| 2anrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 41.0 | 4.12e-01 | 92.5% | 76.2% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 3.70e-01 | 97.5% | 58.7% |
| 7c51A01 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.55 | 46.0 | 4.24e-01 | 98.8% | 75.7% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.54 | 44.0 | 3.64e-01 | 91.3% | 92.2% |
| 4hvzA02 | 3.30.70.2970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 | 0.54 | 46.0 | 4.22e-01 | 100.0% | 78.6% |
| 2axyA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 37.0 | 3.83e-01 | 98.8% | 79.2% |
| 5f47B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 36.0 | 3.02e-01 | 70.0% | 73.7% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.53 | 36.0 | 3.02e-01 | 71.2% | 76.5% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 46.0 | 3.84e-01 | 100.0% | 91.8% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.53 | 45.0 | 4.04e-01 | 100.0% | 99.2% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.98e-01 | 95.0% | 77.6% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.53 | 43.0 | 4.19e-01 | 98.8% | 81.9% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.52 | 41.0 | 3.80e-01 | 97.5% | 65.7% |
| 1l0oA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 41.0 | 3.50e-01 | 88.7% | 96.5% |
| 5afoA01 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.52 | 45.0 | 3.64e-01 | 100.0% | 90.0% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.51 | 41.0 | 3.53e-01 | 96.2% | 92.7% |
| 1d5yB03 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.51 | 41.0 | 3.39e-01 | 95.0% | 45.2% |
| 2vz6B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 34.0 | 3.37e-01 | 97.5% | 66.3% |
| 1nvmB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 42.0 | 3.55e-01 | 100.0% | 79.2% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3486590 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.83 | 76.0 | 7.14e-01 | 98.8% | 98.9% |
| 3258030 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.82 | 72.0 | 7.42e-01 | 96.2% | 100.0% |
| 4002973 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.82 | 74.0 | 6.95e-01 | 100.0% | 82.1% |
| 3698809 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.82 | 74.0 | 7.00e-01 | 98.8% | 100.0% |
| 3355267 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.82 | 74.0 | 7.41e-01 | 100.0% | 97.5% |
| 3508633 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.81 | 73.0 | 6.86e-01 | 100.0% | 82.1% |
| 3333647 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.80 | 69.0 | 7.10e-01 | 96.2% | 100.0% |
| 3390090 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.79 | 72.0 | 6.66e-01 | 100.0% | 79.0% |
| 3737377 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.79 | 68.0 | 7.04e-01 | 96.2% | 100.0% |
| 3820049 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.78 | 69.0 | 6.94e-01 | 100.0% | 97.5% |
| 5000638 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.77 | 70.0 | 7.08e-01 | 100.0% | 100.0% |
| 5042175 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.77 | 65.0 | 6.73e-01 | 96.2% | 100.0% |
| 4026327 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.76 | 68.0 | 6.86e-01 | 100.0% | 98.8% |
| 3642157 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.76 | 67.0 | 6.21e-01 | 96.2% | 98.0% |
| 3226473 | 872.1.1.9 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › PF29479 | 0.76 | 66.0 | 6.23e-01 | 96.2% | 80.0% |
| 4945722 | 872.1.1.14 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › S1 | 0.76 | 64.0 | 6.59e-01 | 96.2% | 100.0% |
| 166965 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.75 | 66.0 | 6.69e-01 | 100.0% | 100.0% |
| 1921523 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.75 | 68.0 | 5.93e-01 | 100.0% | 74.8% |
| 3785425 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.74 | 67.0 | 6.00e-01 | 100.0% | 80.9% |
| 5022585 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.74 | 63.0 | 6.39e-01 | 95.0% | 100.0% |
| 3600230 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.74 | 66.0 | 6.28e-01 | 100.0% | 93.7% |
| 4933855 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.73 | 62.0 | 6.37e-01 | 96.2% | 100.0% |
| 3702711 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.73 | 66.0 | 6.36e-01 | 100.0% | 98.9% |
| 5028399 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.73 | 61.0 | 6.27e-01 | 96.2% | 100.0% |
| 4026228 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.73 | 61.0 | 6.30e-01 | 96.2% | 100.0% |
| 3577483 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 62.0 | 6.18e-01 | 100.0% | 91.8% |
| 3501878 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 60.0 | 6.19e-01 | 96.2% | 100.0% |
| 3929328 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.72 | 60.0 | 6.17e-01 | 96.2% | 100.0% |
| 5035374 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.71 | 60.0 | 6.23e-01 | 96.2% | 100.0% |
| 4522746 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 51.0 | 4.12e-01 | 92.5% | 39.4% |
| 4956432 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.71 | 59.0 | 6.05e-01 | 96.2% | 100.0% |
| 5049826 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.71 | 59.0 | 6.04e-01 | 96.2% | 100.0% |
| 143841 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.68 | 58.0 | 5.87e-01 | 100.0% | 100.0% |
| 3436180 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 43.0 | 4.53e-01 | 96.2% | 81.4% |
| 5017849 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.60 | 45.0 | 4.25e-01 | 98.8% | 66.0% |
| 3723339 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.60 | 50.0 | 4.62e-01 | 100.0% | 99.1% |
| 4032204 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.59 | 52.0 | 3.36e-01 | 100.0% | 20.8% |
| 4435043 | 2484.1.1.178 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA+FtsA | 0.59 | 52.0 | 3.35e-01 | 100.0% | 20.7% |
| 4109123 | 2484.1.1.27 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA | 0.59 | 51.0 | 3.85e-01 | 100.0% | 38.1% |
| 3536084 | 304.47.1.3 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA_Gpr126 | 0.59 | 51.0 | 4.58e-01 | 100.0% | 73.9% |
| 3365211 | 304.39.1.2 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Msl2-3_C | 0.57 | 45.0 | 4.61e-01 | 100.0% | 96.0% |
| 3339622 | 2003.1.5.342 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TYW2_N_2 | 0.56 | 48.0 | 3.51e-01 | 97.5% | 34.8% |
| 3194885 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 45.0 | 2.96e-01 | 96.2% | 18.5% |
| 3943855 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 46.0 | 4.08e-01 | 97.5% | 63.3% |
| 4991759 | 886.1.1.2 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like | 0.54 | 39.0 | 3.48e-01 | 91.3% | 50.8% |
| 3189276 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.54 | 44.0 | 3.45e-01 | 95.0% | 59.1% |
| 3732940 | 304.42.1.1 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC | 0.54 | 46.0 | 3.64e-01 | 100.0% | 62.8% |
| 2106280 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.52 | 41.0 | 3.49e-01 | 92.5% | 92.3% |
| 3993316 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.52 | 45.0 | 3.06e-01 | 100.0% | 32.3% |
| 3225634 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.52 | 45.0 | 3.75e-01 | 100.0% | 75.3% |
D2
high
residues 97-176